Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 IGKV2-26-201ENST00000518305 343 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AP001189.2-201ENST00000527320 189 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AP004242.1-201ENST00000533701 349 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 GTF2IP8-201ENST00000560687 584 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL669831.4-202ENST00000590817 238 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 SNRPGP15-201ENST00000600149 222 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC091057.3-201ENST00000602684 733 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC068790.5-201ENST00000602741 355 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 DPRXP5-201ENST00000604662 539 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 YPEL5P2-201ENST00000605553 359 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC092954.1-201ENST00000609121 445 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 OR4G3P-201ENST00000633500 913 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC012020.1-201ENST00000624541 1728 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TNFRSF4P43489 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TNFRSF4P43489 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNU6-263P-201ENST00000363811 107 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNU6-335P-201ENST00000364563 113 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNA5SP189-201ENST00000364920 115 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNA5SP104-201ENST00000410989 118 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 RPL7P53-201ENST00000421245 739 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 SEPT7P5-201ENST00000434048 306 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL138799.3-201ENST00000438968 350 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL356535.1-201ENST00000440335 398 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 MTCO1P48-201ENST00000448024 1096 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 NPM1P49-201ENST00000448027 714 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL034418.1-201ENST00000448675 860 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 ANP32BP2-201ENST00000454525 545 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 snoU13.3-201ENST00000459441 104 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNA5SP309-201ENST00000516670 106 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 IGHV3-32-201ENST00000519182 355 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 VN1R79P-201ENST00000593540 513 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC005000.2-201ENST00000605468 310 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC024060.1-201ENST00000607052 494 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC073968.1-201ENST00000618594 637 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC104985.3-201ENST00000623479 597 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
TNFRSF4P43489 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
TNFRSF4P43489 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
TNFRSF4P43489 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TNFRSF4P43489 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TNFRSF4P43489 SUGT1P1-201ENST00000379514 476 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 TAF9BP1-201ENST00000396646 746 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 HSPE1P8-201ENST00000406997 288 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 RNU4-78P-201ENST00000410940 126 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 Z92545.1-201ENST00000411782 234 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 MTND2P16-201ENST00000419987 799 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 AL513174.1-201ENST00000423182 629 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 USP12PY-201ENST00000427677 1064 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 AC017083.1-201ENST00000428093 483 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 AC093155.1-201ENST00000440164 826 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 184.6 ms