Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 IGKV2-26-201ENST00000518305 343 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AP001189.2-201ENST00000527320 189 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AP004242.1-201ENST00000533701 349 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 GTF2IP8-201ENST00000560687 584 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL669831.4-202ENST00000590817 238 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 SNRPGP15-201ENST00000600149 222 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC091057.3-201ENST00000602684 733 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC068790.5-201ENST00000602741 355 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 DPRXP5-201ENST00000604662 539 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 YPEL5P2-201ENST00000605553 359 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC092954.1-201ENST00000609121 445 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 OR4G3P-201ENST00000633500 913 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.56□□□□□ -1.84
TNFRSF4P43489 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TNFRSF4P43489 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 AC012020.1-201ENST00000624541 1728 ntBASIC3.56□□□□□ -1.84
TNFRSF4P43489 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TNFRSF4P43489 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TNFRSF4P43489 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNU6-263P-201ENST00000363811 107 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNU6-335P-201ENST00000364563 113 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNA5SP189-201ENST00000364920 115 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNA5SP104-201ENST00000410989 118 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 RPL7P53-201ENST00000421245 739 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 SEPT7P5-201ENST00000434048 306 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL138799.3-201ENST00000438968 350 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL356535.1-201ENST00000440335 398 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 MTCO1P48-201ENST00000448024 1096 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 NPM1P49-201ENST00000448027 714 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AL034418.1-201ENST00000448675 860 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 ANP32BP2-201ENST00000454525 545 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 snoU13.3-201ENST00000459441 104 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 RNA5SP309-201ENST00000516670 106 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 IGHV3-32-201ENST00000519182 355 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 VN1R79P-201ENST00000593540 513 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC005000.2-201ENST00000605468 310 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC024060.1-201ENST00000607052 494 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC073968.1-201ENST00000618594 637 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 AC104985.3-201ENST00000623479 597 ntBASIC3.55□□□□□ -1.84
TNFRSF4P43489 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
TNFRSF4P43489 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
TNFRSF4P43489 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.55□□□□□ -1.84
TNFRSF4P43489 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
TNFRSF4P43489 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TNFRSF4P43489 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
TNFRSF4P43489 SUGT1P1-201ENST00000379514 476 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 TAF9BP1-201ENST00000396646 746 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 HSPE1P8-201ENST00000406997 288 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 RNU4-78P-201ENST00000410940 126 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 Z92545.1-201ENST00000411782 234 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 MTND2P16-201ENST00000419987 799 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 AL513174.1-201ENST00000423182 629 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 USP12PY-201ENST00000427677 1064 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 AC017083.1-201ENST00000428093 483 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 AC093155.1-201ENST00000440164 826 ntBASIC3.54□□□□□ -1.84
TNFRSF4P43489 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.54□□□□□ -1.84
TNFRSF4P43489 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 184.6 ms