Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 LINC00622-201ENST00000562811 1570 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AC108467.2-201ENST00000617640 1597 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.67□□□□□ -1.66
MSX2P35548 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
MSX2P35548 SNORA51.2-201ENST00000364595 132 ntBASIC4.67□□□□□ -1.66
MSX2P35548 RNU6-343P-201ENST00000364709 104 ntBASIC4.67□□□□□ -1.66
MSX2P35548 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 RNU2-8P-201ENST00000410727 190 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 MTATP6P18-201ENST00000417994 673 ntBASIC4.67□□□□□ -1.66
MSX2P35548 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AL353777.1-201ENST00000425552 326 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 AC004938.1-201ENST00000438468 308 ntBASIC4.67□□□□□ -1.66
MSX2P35548 HMGN3P1-201ENST00000453847 193 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 RN7SL629P-201ENST00000489622 285 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.67□□□□□ -1.66
MSX2P35548 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.67□□□□□ -1.66
MSX2P35548 PHBP17-201ENST00000528576 541 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AP003072.1-201ENST00000531740 145 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.67□□□□□ -1.66
MSX2P35548 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.67□□□□□ -1.66
MSX2P35548 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.67□□□□□ -1.66
MSX2P35548 AC010547.6-201ENST00000571789 193 ntBASIC4.67□□□□□ -1.66
MSX2P35548 SNORD95-201ENST00000579879 68 ntBASIC4.67□□□□□ -1.66
MSX2P35548 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.67□□□□□ -1.66
MSX2P35548 AC013244.1-201ENST00000604279 193 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AL162730.1-201ENST00000605734 292 ntBASIC4.67□□□□□ -1.66
MSX2P35548 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.67□□□□□ -1.66
MSX2P35548 AC090527.3-201ENST00000619041 548 ntBASIC4.67□□□□□ -1.66
MSX2P35548 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 AC024940.5-201ENST00000622889 474 ntBASIC4.67□□□□□ -1.66
MSX2P35548 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 U6.101-201ENST00000637707 76 ntBASIC4.67□□□□□ -1.66
MSX2P35548 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
MSX2P35548 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
MSX2P35548 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX2P35548 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
MSX2P35548 RNU5E-1-201ENST00000362477 120 ntBASIC4.66□□□□□ -1.66
MSX2P35548 Y_RNA.157-201ENST00000363638 102 ntBASIC4.66□□□□□ -1.66
MSX2P35548 RN7SKP292-201ENST00000365522 317 ntBASIC4.66□□□□□ -1.66
MSX2P35548 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
MSX2P35548 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 RNU6-730P-201ENST00000383954 104 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AP000534.2-201ENST00000412729 568 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AL358176.3-201ENST00000420757 454 ntBASIC4.66□□□□□ -1.66
MSX2P35548 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
MSX2P35548 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX2P35548 BRWD1P3-201ENST00000428816 390 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX2P35548 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX2P35548 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX2P35548 AC092162.1-201ENST00000432828 434 ntBASIC4.66□□□□□ -1.66
MSX2P35548 MTND6P18-201ENST00000439477 513 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 RPS29P9-201ENST00000440360 171 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC064862.4-201ENST00000442180 334 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 AC140076.1-201ENST00000449897 361 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AL645937.3-201ENST00000453647 936 ntBASIC4.66□□□□□ -1.66
MSX2P35548 Z92846.1-201ENST00000456203 268 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC023141.9-201ENST00000458734 412 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC100832.1-201ENST00000471945 383 ntBASIC4.66□□□□□ -1.66
MSX2P35548 DEFB109F-201ENST00000491870 277 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX2P35548 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSX2P35548 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX2P35548 AC126177.5-201ENST00000549599 178 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC008127.2-201ENST00000549925 1075 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.66□□□□□ -1.66
MSX2P35548 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX2P35548 MIR4512-201ENST00000583257 77 ntBASIC4.66□□□□□ -1.66
MSX2P35548 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.66□□□□□ -1.66
MSX2P35548 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.66□□□□□ -1.66
MSX2P35548 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.66□□□□□ -1.66
MSX2P35548 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms