Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC2.92□□□□□ -1.94
USF1P22415 RPS3AP50-201ENST00000487064 803 ntBASIC2.92□□□□□ -1.94
USF1P22415 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 RNU6-1073P-201ENST00000517182 106 ntBASIC2.92□□□□□ -1.94
USF1P22415 HMGB1P1-201ENST00000522557 636 ntBASIC2.92□□□□□ -1.94
USF1P22415 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC2.92□□□□□ -1.94
USF1P22415 SYF2P1-201ENST00000550658 413 ntBASIC2.92□□□□□ -1.94
USF1P22415 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 AC074051.3-201ENST00000570238 358 ntBASIC2.92□□□□□ -1.94
USF1P22415 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 AC006557.5-201ENST00000603126 811 ntBASIC2.92□□□□□ -1.94
USF1P22415 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.92□□□□□ -1.94
USF1P22415 AC105227.2-201ENST00000615075 605 ntBASIC2.92□□□□□ -1.94
USF1P22415 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USF1P22415 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 AC093010.3-201ENST00000570269 15214 ntBASIC2.92□□□□□ -1.94
USF1P22415 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.92□□□□□ -1.94
USF1P22415 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
USF1P22415 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
USF1P22415 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USF1P22415 Y_RNA.493-201ENST00000384422 102 ntBASIC2.91□□□□□ -1.94
USF1P22415 AL583834.1-201ENST00000406943 343 ntBASIC2.91□□□□□ -1.94
USF1P22415 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
USF1P22415 SNORA11.2-201ENST00000408318 127 ntBASIC2.91□□□□□ -1.94
USF1P22415 U3.39-201ENST00000408569 239 ntBASIC2.91□□□□□ -1.94
USF1P22415 OR51A3P-201ENST00000413596 924 ntBASIC2.91□□□□□ -1.94
USF1P22415 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC2.91□□□□□ -1.94
USF1P22415 LIPT1P1-201ENST00000415870 1186 ntBASIC2.91□□□□□ -1.94
USF1P22415 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 RPP40P1-201ENST00000426762 456 ntBASIC2.91□□□□□ -1.94
USF1P22415 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 AL512661.1-201ENST00000434586 1253 ntBASIC2.91□□□□□ -1.94
USF1P22415 MTND4P15-201ENST00000437913 1033 ntBASIC2.91□□□□□ -1.94
USF1P22415 AC006028.1-201ENST00000438379 402 ntBASIC2.91□□□□□ -1.94
USF1P22415 RPL7P59-201ENST00000447700 943 ntBASIC2.91□□□□□ -1.94
USF1P22415 BTF3P5-201ENST00000457252 467 ntBASIC2.91□□□□□ -1.94
USF1P22415 RPS4XP6-201ENST00000477670 797 ntBASIC2.91□□□□□ -1.94
USF1P22415 ACTG1P13-201ENST00000486987 1043 ntBASIC2.91□□□□□ -1.94
USF1P22415 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 HMGB1P22-201ENST00000505315 124 ntBASIC2.91□□□□□ -1.94
USF1P22415 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 FCF1P8-201ENST00000510322 597 ntBASIC2.91□□□□□ -1.94
USF1P22415 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.91□□□□□ -1.94
USF1P22415 AC010265.1-201ENST00000513509 211 ntBASIC2.91□□□□□ -1.94
USF1P22415 PRELID3BP4-201ENST00000515476 571 ntBASIC2.91□□□□□ -1.94
USF1P22415 RN7SKP289-201ENST00000517244 295 ntBASIC2.91□□□□□ -1.94
USF1P22415 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
USF1P22415 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 TRAV37-201ENST00000553906 342 ntBASIC2.91□□□□□ -1.94
USF1P22415 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 AC079148.1-201ENST00000565944 819 ntBASIC2.91□□□□□ -1.94
USF1P22415 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 BPTFP1-201ENST00000579209 492 ntBASIC2.91□□□□□ -1.94
USF1P22415 AL669831.4-202ENST00000590817 238 ntBASIC2.91□□□□□ -1.94
USF1P22415 YPEL5P2-201ENST00000605553 359 ntBASIC2.91□□□□□ -1.94
USF1P22415 AL513477.2-201ENST00000607858 568 ntBASIC2.91□□□□□ -1.94
USF1P22415 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.91□□□□□ -1.94
USF1P22415 AC013468.1-201ENST00000608680 598 ntBASIC2.91□□□□□ -1.94
USF1P22415 AL590282.1-201ENST00000610379 1136 ntBASIC2.91□□□□□ -1.94
USF1P22415 AC068722.2-201ENST00000618734 544 ntBASIC2.91□□□□□ -1.94
USF1P22415 MIR8057-201ENST00000620957 69 ntBASIC2.91□□□□□ -1.94
USF1P22415 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.91□□□□□ -1.94
USF1P22415 AC097460.3-201ENST00000623099 442 ntBASIC2.91□□□□□ -1.94
USF1P22415 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
USF1P22415 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
USF1P22415 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.91□□□□□ -1.94
USF1P22415 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
USF1P22415 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
USF1P22415 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.91□□□□□ -1.94
USF1P22415 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
USF1P22415 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
USF1P22415 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
USF1P22415 ZNF833P-201ENST00000424938 1494 ntBASIC2.9□□□□□ -1.94
USF1P22415 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.9□□□□□ -1.94
USF1P22415 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
USF1P22415 GNG5P1-201ENST00000255500 204 ntBASIC2.9□□□□□ -1.95
USF1P22415 FRG1CP-201ENST00000358464 769 ntBASIC2.9□□□□□ -1.95
USF1P22415 RNU6-263P-201ENST00000363811 107 ntBASIC2.9□□□□□ -1.95
USF1P22415 RNA5SP42-201ENST00000364278 115 ntBASIC2.9□□□□□ -1.95
USF1P22415 RNU6-481P-201ENST00000384194 107 ntBASIC2.9□□□□□ -1.95
USF1P22415 MIR128-1-201ENST00000384921 82 ntBASIC2.9□□□□□ -1.95
USF1P22415 SNORD65C-201ENST00000390962 71 ntBASIC2.9□□□□□ -1.95
USF1P22415 RPL31P1-201ENST00000398116 372 ntBASIC2.9□□□□□ -1.95
USF1P22415 BX323014.1-201ENST00000412876 237 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.9□□□□□ -1.95
USF1P22415 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC2.9□□□□□ -1.95
USF1P22415 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.9□□□□□ -1.95
USF1P22415 AL512649.1-201ENST00000428997 581 ntBASIC2.9□□□□□ -1.95
USF1P22415 B3GNT2P1-201ENST00000434960 952 ntBASIC2.9□□□□□ -1.95
USF1P22415 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC2.9□□□□□ -1.95
USF1P22415 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.9□□□□□ -1.95
USF1P22415 HSFY3P-201ENST00000444242 1191 ntBASIC2.9□□□□□ -1.95
USF1P22415 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.9□□□□□ -1.95
USF1P22415 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms