Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC6.56□□□□□ -1.36
COL9A1P20849 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.56□□□□□ -1.36
COL9A1P20849 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 PABPC1P6-201ENST00000445594 1829 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 RNA5SP110-201ENST00000362638 115 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 Y_RNA.353-201ENST00000365440 108 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 Y_RNA.435-201ENST00000384095 112 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 Y_RNA.441-201ENST00000384123 112 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 MIR137-201ENST00000385223 102 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 U3.29-201ENST00000391296 212 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 SNORA11.2-201ENST00000408318 127 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 RNA5SP494-201ENST00000410653 129 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 RPL21P90-201ENST00000415692 466 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC6.56□□□□□ -1.36
COL9A1P20849 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.56□□□□□ -1.36
COL9A1P20849 RNU6-1218P-201ENST00000458990 108 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 AC053481.1-201ENST00000467217 306 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 OR2AO1P-201ENST00000476497 403 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 AP006245.1-201ENST00000522549 120 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC6.56□□□□□ -1.36
COL9A1P20849 OR1F2P-201ENST00000570470 933 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 MIR4330-201ENST00000579077 105 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 MIR4436B2-201ENST00000581415 91 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 MIR4436B1-201ENST00000583272 91 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 AC005191.1-201ENST00000603950 358 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.56□□□□□ -1.36
COL9A1P20849 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.56□□□□□ -1.36
COL9A1P20849 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
COL9A1P20849 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL9A1P20849 AC006484.1-201ENST00000435086 1884 ntBASIC6.56□□□□□ -1.36
COL9A1P20849 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
COL9A1P20849 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
COL9A1P20849 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
COL9A1P20849 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
COL9A1P20849 Y_RNA.580-201ENST00000391004 95 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 RPL21P75-201ENST00000396599 483 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 RPL21P28-201ENST00000401418 483 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AL035461.1-201ENST00000421490 332 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AL590556.1-201ENST00000423231 483 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AC093655.2-201ENST00000425735 631 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AC008267.6-201ENST00000441664 139 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 RNU6-953P-201ENST00000459154 107 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 RNU6-1037P-201ENST00000459571 107 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AP001324.2-201ENST00000461163 319 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 RPL21P11-201ENST00000461458 483 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 RPL21P39-201ENST00000463605 483 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AC132942.1-201ENST00000486753 483 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AC093591.1-201ENST00000491435 481 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 RPS27P26-201ENST00000494583 239 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 RPL21P16-201ENST00000495531 483 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC6.55□□□□□ -1.36
COL9A1P20849 AC016065.2-201ENST00000514530 444 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC6.55□□□□□ -1.36
COL9A1P20849 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.55□□□□□ -1.36
COL9A1P20849 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC6.55□□□□□ -1.36
COL9A1P20849 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC6.55□□□□□ -1.36
COL9A1P20849 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.55□□□□□ -1.36
COL9A1P20849 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC6.55□□□□□ -1.36
COL9A1P20849 AC067852.3-201ENST00000589177 561 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.55□□□□□ -1.36
COL9A1P20849 AC068768.2-201ENST00000602352 343 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC6.55□□□□□ -1.36
COL9A1P20849 AC006329.2-201ENST00000611491 394 ntBASIC6.55□□□□□ -1.36
COL9A1P20849 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.55□□□□□ -1.36
COL9A1P20849 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.55□□□□□ -1.36
COL9A1P20849 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.55□□□□□ -1.36
COL9A1P20849 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL9A1P20849 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
COL9A1P20849 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
COL9A1P20849 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 AC015799.1-201ENST00000622996 3122 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.54□□□□□ -1.36
COL9A1P20849 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL9A1P20849 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 AC092747.4-201ENST00000620519 1861 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL9A1P20849 RNU6-326P-201ENST00000365480 107 ntBASIC6.54□□□□□ -1.36
COL9A1P20849 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL9A1P20849 RNU11-4P-201ENST00000391149 133 ntBASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms