Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL713922.2-201ENST00000619384 716 ntBASIC3.83□□□□□ -1.8
MSH3P20585 RNU6-156P-201ENST00000621869 107 ntBASIC3.83□□□□□ -1.8
MSH3P20585 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.83□□□□□ -1.8
MSH3P20585 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.83□□□□□ -1.8
MSH3P20585 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.83□□□□□ -1.8
MSH3P20585 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.83□□□□□ -1.8
MSH3P20585 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.83□□□□□ -1.8
MSH3P20585 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSH3P20585 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
MSH3P20585 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSH3P20585 AC107081.3-201ENST00000612715 2034 ntBASIC3.82□□□□□ -1.8
MSH3P20585 EXOC5P1-201ENST00000510543 1969 ntBASIC3.82□□□□□ -1.8
MSH3P20585 HSPA8P1-201ENST00000425843 1833 ntBASIC3.82□□□□□ -1.8
MSH3P20585 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH3P20585 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.82□□□□□ -1.8
MSH3P20585 CDR1-202ENST00000625883 1485 ntBASIC3.82□□□□□ -1.8
MSH3P20585 MTND5P31-201ENST00000419366 1374 ntBASIC3.82□□□□□ -1.8
MSH3P20585 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSH3P20585 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSH3P20585 SKINT1L-201ENST00000401057 817 ntBASIC3.82□□□□□ -1.8
MSH3P20585 HLFP1-201ENST00000402375 499 ntBASIC3.82□□□□□ -1.8
MSH3P20585 SNORA3.3-201ENST00000408712 125 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AC004987.3-201ENST00000413879 771 ntBASIC3.82□□□□□ -1.8
MSH3P20585 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.82□□□□□ -1.8
MSH3P20585 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH3P20585 RPL7P38-201ENST00000488396 739 ntBASIC3.82□□□□□ -1.8
MSH3P20585 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.82□□□□□ -1.8
MSH3P20585 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 HSPE1P23-201ENST00000509838 286 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
MSH3P20585 RNU6-232P-201ENST00000517144 64 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.82□□□□□ -1.8
MSH3P20585 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.82□□□□□ -1.8
MSH3P20585 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AP000790.1-201ENST00000528891 737 ntBASIC3.82□□□□□ -1.8
MSH3P20585 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 CYCSP30-201ENST00000546447 172 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH3P20585 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 AP001180.3-201ENST00000582221 145 ntBASIC3.82□□□□□ -1.8
MSH3P20585 PIGPP4-201ENST00000584447 307 ntBASIC3.82□□□□□ -1.8
MSH3P20585 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 AC006539.2-201ENST00000601729 572 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH3P20585 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH3P20585 AC091946.2-201ENST00000606105 291 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH3P20585 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AL354798.1-201ENST00000622505 329 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH3P20585 AC004943.3-201ENST00000624116 600 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH3P20585 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSH3P20585 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSH3P20585 AP001486.2-201ENST00000561652 5113 ntBASIC3.82□□□□□ -1.8
MSH3P20585 LINC00561-201ENST00000565815 2738 ntBASIC3.82□□□□□ -1.8
MSH3P20585 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH3P20585 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH3P20585 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH3P20585 Y_RNA.25-201ENST00000362528 102 ntBASIC3.81□□□□□ -1.8
MSH3P20585 RNU6-216P-201ENST00000363282 104 ntBASIC3.81□□□□□ -1.8
MSH3P20585 MIR199A2-201ENST00000385289 110 ntBASIC3.81□□□□□ -1.8
MSH3P20585 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
MSH3P20585 HMGN2P8-201ENST00000391458 268 ntBASIC3.81□□□□□ -1.8
MSH3P20585 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH3P20585 FABP12P1-201ENST00000401911 322 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH3P20585 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH3P20585 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH3P20585 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH3P20585 NPM1P34-201ENST00000428821 893 ntBASIC3.81□□□□□ -1.8
MSH3P20585 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH3P20585 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH3P20585 DNAJC19P1-201ENST00000455312 319 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH3P20585 RPL37P6-202ENST00000464216 403 ntBASIC3.81□□□□□ -1.8
MSH3P20585 BZW1P2-201ENST00000473537 826 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AP000893.1-201ENST00000474462 794 ntBASIC3.81□□□□□ -1.8
MSH3P20585 RPS3AP43-201ENST00000479743 781 ntBASIC3.81□□□□□ -1.8
MSH3P20585 SETP14-201ENST00000497538 873 ntBASIC3.81□□□□□ -1.8
MSH3P20585 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH3P20585 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
MSH3P20585 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH3P20585 RNA5SP164-201ENST00000516533 110 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AC008802.1-201ENST00000519121 791 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AC022695.1-201ENST00000522089 237 ntBASIC3.81□□□□□ -1.8
MSH3P20585 ARL2BPP5-201ENST00000523141 481 ntBASIC3.81□□□□□ -1.8
MSH3P20585 PTP4A1P6-201ENST00000531034 478 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.81□□□□□ -1.8
MSH3P20585 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH3P20585 AC125611.1-201ENST00000549563 229 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AGGF1P8-201ENST00000562979 1000 ntBASIC3.81□□□□□ -1.8
MSH3P20585 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH3P20585 RN7SL703P-201ENST00000578485 302 ntBASIC3.81□□□□□ -1.8
MSH3P20585 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH3P20585 MIR5685-201ENST00000579080 79 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms