Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 RNU1-61P-201ENST00000516107 151 ntBASIC3.23□□□□□ -1.89
LSM1O15116 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.23□□□□□ -1.89
LSM1O15116 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.23□□□□□ -1.89
LSM1O15116 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.23□□□□□ -1.89
LSM1O15116 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
LSM1O15116 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.23□□□□□ -1.89
LSM1O15116 AC005476.1-201ENST00000554427 397 ntBASIC3.23□□□□□ -1.89
LSM1O15116 LINC00557-201ENST00000563184 1279 ntBASIC3.23□□□□□ -1.89
LSM1O15116 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.23□□□□□ -1.89
LSM1O15116 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
LSM1O15116 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
LSM1O15116 AC231759.1-201ENST00000616455 597 ntBASIC3.23□□□□□ -1.89
LSM1O15116 AL118508.4-201ENST00000624142 1176 ntBASIC3.23□□□□□ -1.89
LSM1O15116 AC097372.4-201ENST00000625025 466 ntBASIC3.23□□□□□ -1.89
LSM1O15116 AC073476.4-201ENST00000628409 72 ntBASIC3.23□□□□□ -1.89
LSM1O15116 AC127502.3-201ENST00000636170 1206 ntBASIC3.23□□□□□ -1.89
LSM1O15116 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.23□□□□□ -1.89
LSM1O15116 CR383658.2-201ENST00000547576 1525 ntBASIC3.23□□□□□ -1.89
LSM1O15116 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.23□□□□□ -1.89
LSM1O15116 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.22□□□□□ -1.89
LSM1O15116 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.22□□□□□ -1.89
LSM1O15116 MAPK10-322ENST00000641485 4530 ntBASIC3.22□□□□□ -1.89
LSM1O15116 RNA5SP124-201ENST00000362739 110 ntBASIC3.22□□□□□ -1.89
LSM1O15116 RNA5SP258-201ENST00000362750 119 ntBASIC3.22□□□□□ -1.89
LSM1O15116 RNU6-619P-201ENST00000365146 108 ntBASIC3.22□□□□□ -1.89
LSM1O15116 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
LSM1O15116 RNU6-761P-201ENST00000384148 107 ntBASIC3.22□□□□□ -1.89
LSM1O15116 MIR649-201ENST00000384843 97 ntBASIC3.22□□□□□ -1.89
LSM1O15116 SNORD17-201ENST00000390930 237 ntBASIC3.22□□□□□ -1.89
LSM1O15116 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
LSM1O15116 RN7SKP58-201ENST00000411010 305 ntBASIC3.22□□□□□ -1.89
LSM1O15116 MRPL50P2-201ENST00000416821 482 ntBASIC3.22□□□□□ -1.89
LSM1O15116 SYF2P2-201ENST00000417620 583 ntBASIC3.22□□□□□ -1.89
LSM1O15116 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.22□□□□□ -1.89
LSM1O15116 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 AC005002.1-201ENST00000447458 540 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.22□□□□□ -1.89
LSM1O15116 ACTR3P3-201ENST00000480448 893 ntBASIC3.22□□□□□ -1.89
LSM1O15116 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 RNU1-95P-201ENST00000516357 160 ntBASIC3.22□□□□□ -1.89
LSM1O15116 RNU1-128P-201ENST00000516704 160 ntBASIC3.22□□□□□ -1.89
LSM1O15116 SCARNA20.6-201ENST00000517251 106 ntBASIC3.22□□□□□ -1.89
LSM1O15116 RNU6-711P-201ENST00000517255 106 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AP000790.1-201ENST00000528891 737 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.22□□□□□ -1.89
LSM1O15116 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 BNIP3P5-201ENST00000562290 498 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AC087481.2-201ENST00000565492 330 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AC023824.3-201ENST00000569003 562 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.22□□□□□ -1.89
LSM1O15116 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.22□□□□□ -1.89
LSM1O15116 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.22□□□□□ -1.89
LSM1O15116 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.22□□□□□ -1.89
LSM1O15116 AC093227.2-201ENST00000589357 285 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AC013468.1-201ENST00000608680 598 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AC090116.1-201ENST00000615679 446 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AC068722.2-201ENST00000618734 544 ntBASIC3.22□□□□□ -1.89
LSM1O15116 SNORD39.4-201ENST00000620099 78 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.22□□□□□ -1.89
LSM1O15116 AC090617.7-201ENST00000623952 126 ntBASIC3.22□□□□□ -1.89
LSM1O15116 AC098679.5-201ENST00000624394 571 ntBASIC3.22□□□□□ -1.89
LSM1O15116 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.22□□□□□ -1.89
LSM1O15116 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
LSM1O15116 ZNF285B-201ENST00000561698 1767 ntBASIC3.22□□□□□ -1.89
LSM1O15116 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
LSM1O15116 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
LSM1O15116 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.22□□□□□ -1.89
LSM1O15116 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.21□□□□□ -1.89
LSM1O15116 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.21□□□□□ -1.89
LSM1O15116 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
LSM1O15116 SNORD56.3-201ENST00000363507 71 ntBASIC3.21□□□□□ -1.9
LSM1O15116 SNORA5A-201ENST00000384111 134 ntBASIC3.21□□□□□ -1.9
LSM1O15116 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.21□□□□□ -1.9
LSM1O15116 RN7SKP159-201ENST00000410657 292 ntBASIC3.21□□□□□ -1.9
LSM1O15116 RNU4-78P-201ENST00000410940 126 ntBASIC3.21□□□□□ -1.9
LSM1O15116 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.21□□□□□ -1.9
LSM1O15116 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.21□□□□□ -1.9
LSM1O15116 RAD23BP2-201ENST00000416003 1207 ntBASIC3.21□□□□□ -1.9
LSM1O15116 AC012065.2-201ENST00000421295 375 ntBASIC3.21□□□□□ -1.9
LSM1O15116 HSPE1P1-201ENST00000421494 318 ntBASIC3.21□□□□□ -1.9
LSM1O15116 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
LSM1O15116 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LSM1O15116 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LSM1O15116 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.21□□□□□ -1.9
LSM1O15116 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.21□□□□□ -1.9
LSM1O15116 RPL36AP33-201ENST00000450395 310 ntBASIC3.21□□□□□ -1.9
LSM1O15116 GTF2IP12-201ENST00000456547 356 ntBASIC3.21□□□□□ -1.9
LSM1O15116 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.21□□□□□ -1.9
LSM1O15116 AC025518.1-201ENST00000479856 347 ntBASIC3.21□□□□□ -1.9
LSM1O15116 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.21□□□□□ -1.9
LSM1O15116 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.21□□□□□ -1.9
LSM1O15116 FCF1P8-201ENST00000510322 597 ntBASIC3.21□□□□□ -1.9
LSM1O15116 IGKV2-26-201ENST00000518305 343 ntBASIC3.21□□□□□ -1.9
LSM1O15116 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms