Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SNORA71.2-201ENST00000364941 134 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 Y_RNA.359-201ENST00000365498 102 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 SNORA37-201ENST00000384504 129 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 MIR134-201ENST00000385258 73 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 DHFRP6-201ENST00000401776 268 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 Y_RNA.619-201ENST00000410951 90 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 RN7SKP167-201ENST00000411047 285 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 TPMTP2-201ENST00000414372 726 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 RAC1P3-201ENST00000416129 580 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC004552.1-201ENST00000419089 348 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 PDSS1P1-201ENST00000422953 1114 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL031667.1-201ENST00000440222 725 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL359073.1-201ENST00000448036 403 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL162388.1-201ENST00000450912 352 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC104073.1-201ENST00000451988 151 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 CFTRP1-201ENST00000456646 183 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 RPS26P3-201ENST00000470205 348 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 RPL31P50-201ENST00000471002 296 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC090543.2-201ENST00000483963 348 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC011825.1-201ENST00000484967 388 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC004057.1-201ENST00000485827 348 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC090453.1-201ENST00000495560 436 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC108941.1-201ENST00000502853 530 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC021678.1-201ENST00000505195 936 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 MED28P5-201ENST00000528254 438 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 OR4A45P-201ENST00000529954 901 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC008127.2-201ENST00000549925 1075 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL133457.1-201ENST00000564251 987 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 DEFB131E-202ENST00000602581 683 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 BNIP3P11-201ENST00000603878 563 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL133338.2-201ENST00000604292 736 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC067959.1-201ENST00000604334 379 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AL049536.1-201ENST00000625043 744 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 ELL2P4-201ENST00000446870 1376 ntBASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS4AQ9UN37 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 RNU6-952P-201ENST00000391164 108 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC016769.3-201ENST00000396562 315 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 RNU6-648P-201ENST00000410190 107 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 RPL17P12-201ENST00000413391 526 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 HMGB1P11-201ENST00000413899 637 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 MTCO1P21-201ENST00000416634 589 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC140479.3-201ENST00000418944 1126 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 RPEP3-201ENST00000425462 676 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 CBX1P1-201ENST00000440184 427 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 MTND5P14-201ENST00000441481 1267 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 RPL7P31-201ENST00000450192 724 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 ISCUP1-201ENST00000454451 448 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 TPT1P7-201ENST00000458300 517 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 RPL7P22-201ENST00000466005 733 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AP000797.1-201ENST00000478870 387 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 FABP5P5-201ENST00000515537 406 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 RNU6-405P-201ENST00000516637 110 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 MTND1P5-201ENST00000517906 940 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC124068.1-201ENST00000563131 678 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 MIR4504-201ENST00000577413 92 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC005771.1-201ENST00000585581 349 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms