Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SETP7-201ENST00000552169 453 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 NDUFB4P11-201ENST00000560510 395 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 MIR4458-201ENST00000578872 75 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC127024.5-201ENST00000580085 462 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 COX6CP3-201ENST00000580869 223 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC073091.2-201ENST00000603205 907 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AL391646.1-201ENST00000603860 190 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AP003117.2-201ENST00000606010 545 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC008966.2-201ENST00000606157 453 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC004908.2-201ENST00000609090 574 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC105429.2-201ENST00000610567 517 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC105074.1-201ENST00000623380 3095 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC083843.3-201ENST00000623679 2186 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AL731566.1-201ENST00000620490 1937 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 FAM91A3P-201ENST00000456826 2544 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RNU5A-8P-201ENST00000364102 114 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RN7SKP224-201ENST00000364140 325 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RNA5SP428-201ENST00000365129 132 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RNU6-877P-201ENST00000383868 107 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RNU6-278P-201ENST00000390945 109 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RPL7P60-201ENST00000397636 735 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RPS3AP24-201ENST00000407896 734 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AL139413.1-201ENST00000421309 217 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RBMY2QP-201ENST00000429799 1147 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 HMGB1P31-201ENST00000437242 427 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 HMGB3P12-201ENST00000438745 556 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RN7SL610P-201ENST00000463845 291 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC093270.2-201ENST00000486157 792 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 NDUFA5P12-201ENST00000503796 343 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RNA5SP43-201ENST00000516559 110 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AK6P1-201ENST00000540219 478 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 MIR3167-201ENST00000579623 85 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 RPL12P25-202ENST00000598100 674 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC112230.1-201ENST00000604342 547 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC133644.2-201ENST00000608142 540 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 uc_338.12-201ENST00000616344 181 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC090510.2-201ENST00000617465 629 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC091905.4-201ENST00000623432 202 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AC112204.3-201ENST00000623822 332 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 AL139811.1-201ENST00000424779 2299 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 MTCO1P24-201ENST00000515438 1558 ntBASIC4.99□□□□□ -1.61
TRIM39Q9HCM9 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC000374.1-201ENST00000434698 1745 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AL049555.1-201ENST00000562834 1933 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RNU4-44P-201ENST00000363050 141 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RNU6-1097P-201ENST00000363586 107 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RNU4-1-201ENST00000363925 141 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 SNORA58B-201ENST00000364259 136 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RNU6-1322P-201ENST00000364309 107 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 Y_RNA.295-201ENST00000364918 102 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RNU6-780P-201ENST00000391030 104 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AL645733.1-201ENST00000402250 217 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 FGF7P8-201ENST00000402994 292 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 CCDC58P2-201ENST00000417131 366 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 MTATP6P18-201ENST00000417994 673 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms