Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HSFY4P-201ENST00000415994 1181 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 MTCYBP38-201ENST00000417160 1123 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC009518.2-201ENST00000418056 731 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
NKX3-1Q99801 MTND1P20-201ENST00000430341 950 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AL365396.1-201ENST00000430854 671 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AL356276.2-201ENST00000435919 558 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AL117351.1-201ENST00000438864 766 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC127537.2-201ENST00000439258 465 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 RPS15AP17-201ENST00000470598 390 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AP000926.1-201ENST00000479573 241 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 RPL29P14-201ENST00000495837 428 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC006499.2-201ENST00000513470 337 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 CYCSP29-201ENST00000533731 318 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 RFPL1S-203ENST00000539579 330 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC090888.1-201ENST00000561335 1141 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC136624.4-201ENST00000573044 370 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC025627.2-201ENST00000576220 160 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 MIR4637-201ENST00000582405 84 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AL109653.1-201ENST00000603091 248 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AL354976.1-201ENST00000613843 387 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC090116.1-201ENST00000615679 446 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC009318.4-201ENST00000620496 486 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
NKX3-1Q99801 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
NKX3-1Q99801 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 OTUD4P1-201ENST00000237841 3067 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
NKX3-1Q99801 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.85
NKX3-1Q99801 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
NKX3-1Q99801 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.85
NKX3-1Q99801 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
NKX3-1Q99801 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AL121657.1-201ENST00000327215 531 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 RNA5SP322-201ENST00000363617 119 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 RNA5SP479-201ENST00000364858 117 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 RNU11-4P-201ENST00000391149 133 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AL121972.1-201ENST00000402023 252 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 CYCSP45-201ENST00000402289 315 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AL024474.1-201ENST00000404655 591 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 RPL31P2-201ENST00000413849 377 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC004975.1-201ENST00000428733 208 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 PSMA2P3-201ENST00000429685 675 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AF228730.2-201ENST00000438784 848 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 MTND2P22-201ENST00000444325 1033 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC114755.5-201ENST00000447760 831 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 ARPC3P2-201ENST00000457786 533 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC093767.1-201ENST00000504523 156 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 MTCYBP43-201ENST00000513621 740 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 RNU6-150P-201ENST00000516237 95 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 MIR2116-201ENST00000517221 80 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms