Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS35Q96QK1 AC111188.2-201ENST00000529697 1387 ntBASIC3.49□□□□□ -1.85
VPS35Q96QK1 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS35Q96QK1 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC068647.1-201ENST00000489539 2265 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 RNU6-837P-201ENST00000391056 108 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AL603865.2-201ENST00000401679 213 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AL138880.1-201ENST00000405824 642 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AL024507.1-201ENST00000412741 274 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 FCF1P2-201ENST00000415284 583 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 CRYBB2P1-203ENST00000415709 538 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC017079.2-201ENST00000416102 485 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC002075.2-201ENST00000425207 252 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 MTCYBP32-201ENST00000427945 1084 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 HMGN2P31-201ENST00000432430 273 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC073063.1-201ENST00000434352 607 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 VN1R34P-201ENST00000447387 883 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 U3.44-201ENST00000458938 192 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 RPS3AP50-201ENST00000487064 803 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC112198.4-201ENST00000515450 351 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 OR5AP1P-201ENST00000529730 940 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC068339.2-201ENST00000534395 618 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC037471.2-201ENST00000564941 598 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC008739.3-201ENST00000603262 127 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 AP005137.2-201ENST00000609238 400 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 U4.6-201ENST00000621618 127 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AL592494.2-201ENST00000425455 1548 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS35Q96QK1 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS35Q96QK1 AC130650.2-201ENST00000618736 2403 ntBASIC3.48□□□□□ -1.85
VPS35Q96QK1 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS35Q96QK1 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 FRG1CP-201ENST00000358464 769 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 RNA5SP119-201ENST00000362715 117 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 RNVU1-3-201ENST00000364313 161 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS35Q96QK1 HSPE1P26-201ENST00000405341 275 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AL023807.1-201ENST00000407932 359 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 RNU4-78P-201ENST00000410940 126 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AL035410.1-201ENST00000427409 427 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 ARF4P4-201ENST00000439608 520 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 RPS29P31-201ENST00000446147 164 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AC004022.1-201ENST00000447766 1066 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AL034418.1-201ENST00000448675 860 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AC007967.1-201ENST00000455422 1159 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 MTCYBP37-201ENST00000510642 1133 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 RN7SKP244-201ENST00000516513 307 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 snoZ278.1-201ENST00000517059 112 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AC023632.1-201ENST00000518463 375 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 ARL2BPP5-201ENST00000523141 481 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.47□□□□□ -1.85
VPS35Q96QK1 AC026333.2-201ENST00000542164 106 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS35Q96QK1 DUXAP6-201ENST00000553858 601 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 MIR4429-201ENST00000580105 73 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 MIR4425-201ENST00000580572 84 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS35Q96QK1 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS35Q96QK1 GAS5-AS1-201ENST00000602767 694 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS35Q96QK1 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS35Q96QK1 AL392088.2-201ENST00000637607 285 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS35Q96QK1 AC007496.3-201ENST00000624987 3443 ntBASIC3.47□□□□□ -1.85
VPS35Q96QK1 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
VPS35Q96QK1 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS35Q96QK1 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS35Q96QK1 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.46□□□□□ -1.85
VPS35Q96QK1 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS35Q96QK1 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS35Q96QK1 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms