Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 Z74021.1-201ENST00000423610 407 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 MTCO1P20-201ENST00000425366 358 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 BX890604.2-201ENST00000427883 474 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 MTCYBP45-201ENST00000435243 565 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 PGBD4P3-201ENST00000440731 581 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 RPS27AP13-201ENST00000498403 237 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 MTCYBP17-201ENST00000503579 789 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 HMGB1P29-201ENST00000505659 499 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC026412.2-201ENST00000512270 1075 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC108064.1-201ENST00000513791 460 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 LRRC34P2-201ENST00000514850 553 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 RNA5SP230-201ENST00000517039 122 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC027309.2-201ENST00000520566 192 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AL359219.2-201ENST00000555184 348 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 MIR4429-201ENST00000580105 73 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC009977.1-201ENST00000586015 570 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC093227.2-201ENST00000589357 285 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC060780.3-201ENST00000589464 80 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 FER-210ENST00000628534 558 ntTSL 5 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC026634.1-201ENST00000634369 198 ntBASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
USHBP1Q8N6Y0 AL672167.1-204ENST00000641875 3017 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC021242.1-201ENST00000507315 2035 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 Y_RNA.263-201ENST00000364659 114 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 U8.14-201ENST00000390843 143 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RNU6-780P-201ENST00000391030 104 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RN7SKP235-201ENST00000410662 305 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RNU4-55P-201ENST00000410731 137 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 EIF4A1P3-201ENST00000411521 244 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AL136133.1-201ENST00000413694 376 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 USP9YP27-201ENST00000418455 438 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 GAPDHP17-201ENST00000449858 1001 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RN7SL542P-201ENST00000467147 294 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 ACTR3P3-201ENST00000480448 893 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RPS3AP14-201ENST00000483907 780 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RPL21P129-201ENST00000491732 478 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 HMGN1P12-201ENST00000499125 195 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RNF138P1-201ENST00000502765 546 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 KCTD9P5-201ENST00000504141 1170 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC022447.3-201ENST00000506865 495 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 SNORA48.10-201ENST00000516965 160 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AL009028.1-201ENST00000604895 802 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AL451049.1-201ENST00000608672 497 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC007546.1-201ENST00000619452 559 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 MIR1321-201ENST00000637766 79 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 IQCB2P-201ENST00000401788 1633 ntBASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USHBP1Q8N6Y0 AC107068.1-201ENST00000563286 4218 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 FARSBP1-201ENST00000435808 1778 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 RNF6P1-201ENST00000444889 1784 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AL450338.1-201ENST00000407987 512 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 RN7SKP222-201ENST00000410651 315 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 RNU2-22P-201ENST00000411266 212 ntBASIC5.76□□□□□ -1.49
USHBP1Q8N6Y0 AC073264.1-201ENST00000411508 416 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 225.8 ms