Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC009969.1-201ENST00000438726 172 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 EIF2S2P4-201ENST00000461070 984 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC006254.3-201ENST00000603353 884 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC007621.1-201ENST00000604544 437 ntBASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88AQ3V6T2 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AL135786.1-201ENST00000415892 214 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 Z98742.3-201ENST00000418637 326 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 RPL21P18-201ENST00000469899 480 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 RN7SL636P-201ENST00000497504 294 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AC008565.1-201ENST00000509046 885 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 RN7SKP34-201ENST00000516142 244 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AC067838.1-201ENST00000606064 577 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 AL450489.1-201ENST00000612071 468 ntBASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC88AQ3V6T2 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AL356806.1-201ENST00000422524 916 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 NDUFS5P3-201ENST00000450668 321 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC078785.3-201ENST00000476607 425 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 FRG1DP-201ENST00000635586 771 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 VDAC1P3-201ENST00000434069 851 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 HMGB3P12-201ENST00000438745 556 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC093663.2-201ENST00000484625 313 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 MTND2P13-201ENST00000577438 1039 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC012119.1-201ENST00000603184 222 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 SNORA35B-201ENST00000607417 129 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 AC103798.2-201ENST00000624292 632 ntBASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC88AQ3V6T2 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 RPL23AP15-201ENST00000450202 459 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 RPL23AP62-201ENST00000463396 453 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 OR4G11P-201ENST00000492842 939 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 USP9YP5-201ENST00000511770 630 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 ZNF861P-201ENST00000588126 639 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 AC068313.1-201ENST00000604028 1008 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 AL354950.1-201ENST00000614150 568 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 TAB3P1-202ENST00000452645 1634 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 PHKBP1-201ENST00000450951 1951 ntBASIC3.23□□□□□ -1.89
CCDC88AQ3V6T2 RNU6-618P-201ENST00000363518 112 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 RNU6-146P-201ENST00000384602 108 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 RNU6-233P-201ENST00000410845 141 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 NANOGP5-201ENST00000424456 877 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 BTG3P1-201ENST00000435859 716 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 OR5H5P-201ENST00000503164 928 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 RN7SKP31-201ENST00000516354 278 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 MIR4635-201ENST00000583759 79 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AC078899.3-201ENST00000599065 212 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AC079228.1-201ENST00000624774 1049 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 EXOC5P1-201ENST00000510543 1969 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AL035551.1-201ENST00000446931 348 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 RPL23AP31-201ENST00000456160 467 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 KCTD9P5-201ENST00000504141 1170 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 SNORA9.3-201ENST00000516383 129 ntBASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.22□□□□□ -1.89
CCDC88AQ3V6T2 AC083760.1-201ENST00000589621 670 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms