Protein–RNA interactions for Protein: Q12824

SMARCB1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, humanhuman

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1Q12824 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SMARCB1Q12824 AL163051.2-201ENST00000618976 735 ntBASIC3.33□□□□□ -1.88
SMARCB1Q12824 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.33□□□□□ -1.88
SMARCB1Q12824 AC097372.4-201ENST00000625025 466 ntBASIC3.33□□□□□ -1.88
SMARCB1Q12824 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.33□□□□□ -1.88
SMARCB1Q12824 AL512283.1-201ENST00000606756 1384 ntBASIC3.33□□□□□ -1.88
SMARCB1Q12824 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SMARCB1Q12824 FAM35CP-201ENST00000554755 2470 ntBASIC3.33□□□□□ -1.88
SMARCB1Q12824 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.33□□□□□ -1.88
SMARCB1Q12824 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SMARCB1Q12824 DYNLT3P1-201ENST00000378574 347 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 UBA52P6-201ENST00000399822 382 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 MTATP6P31-201ENST00000406985 692 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 MIR1303-201ENST00000408625 86 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC004987.3-201ENST00000413879 771 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 MTND2P16-201ENST00000419987 799 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SMARCB1Q12824 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC105402.2-201ENST00000438503 358 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 ARPC3P2-201ENST00000457786 533 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 PRDX3P4-201ENST00000470828 747 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC108860.1-201ENST00000484521 383 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC011825.1-201ENST00000484967 388 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 MTND4LP22-201ENST00000508209 276 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 POU5F1P7-201ENST00000508759 541 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 TMEM248P1-201ENST00000510579 951 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC104229.1-201ENST00000561364 255 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 VN1R92P-201ENST00000598511 928 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 AC083865.1-201ENST00000636634 831 ntBASIC3.32□□□□□ -1.88
SMARCB1Q12824 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.32□□□□□ -1.88
SMARCB1Q12824 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SMARCB1Q12824 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SMARCB1Q12824 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
SMARCB1Q12824 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SMARCB1Q12824 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SMARCB1Q12824 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SMARCB1Q12824 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SMARCB1Q12824 RN7SKP220-201ENST00000410611 288 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 RNA5SP31-201ENST00000411144 127 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 HMGB3P31-201ENST00000413333 595 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 TATDN1P1-201ENST00000414123 891 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC023347.2-201ENST00000433994 462 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC140076.1-201ENST00000449897 361 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 RPL37P6-202ENST00000464216 403 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 RPL21P8-201ENST00000465083 535 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC011602.1-201ENST00000546484 331 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC079148.1-201ENST00000565944 819 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC106734.1-201ENST00000568646 663 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 UBL5P2-201ENST00000583788 219 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC011471.1-201ENST00000585766 187 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC069304.3-201ENST00000603938 1084 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC079610.2-201ENST00000604818 690 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 OR2BH1P-201ENST00000608850 864 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AC091903.1-201ENST00000624322 454 ntBASIC3.31□□□□□ -1.88
SMARCB1Q12824 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
SMARCB1Q12824 AL355578.1-201ENST00000607405 1328 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 MFSD8-213ENST00000641134 1327 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 GNG5P1-201ENST00000255500 204 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 RNU1-75P-201ENST00000347264 129 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 Y_RNA.110-201ENST00000363220 99 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 SNORA71.1-201ENST00000364523 117 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SMARCB1Q12824 SKINT1L-201ENST00000401057 817 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 ATP5F1P6-201ENST00000402768 767 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.3□□□□□ -1.88
SMARCB1Q12824 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.3□□□□□ -1.88
SMARCB1Q12824 AC008065.1-201ENST00000428525 348 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 HMGB1P12-201ENST00000438594 598 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 ISCA1P2-201ENST00000438679 421 ntBASIC3.3□□□□□ -1.88
SMARCB1Q12824 AC108734.1-201ENST00000439549 399 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms