Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU6-864P-201ENST00000516256 108 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC5.58□□□□□ -1.52
SOX4Q06945 ZNF705CP-201ENST00000530515 889 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 CYCSP28-201ENST00000534284 321 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX4Q06945 OR4K8P-201ENST00000578842 1048 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 MIR4646-201ENST00000580775 63 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 MIR4436B2-201ENST00000581415 91 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 MIR4436B1-201ENST00000583272 91 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX4Q06945 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.58□□□□□ -1.52
SOX4Q06945 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SOX4Q06945 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SOX4Q06945 AP001350.1-201ENST00000601906 1524 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 AC093671.1-201ENST00000624981 2929 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
SOX4Q06945 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 AC023421.1-201ENST00000590535 1785 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SOX4Q06945 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
SOX4Q06945 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.57□□□□□ -1.52
SOX4Q06945 RNA5SP123-201ENST00000363244 119 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 RNU6-522P-201ENST00000364497 107 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 RNU6-784P-201ENST00000384330 106 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 MIR649-201ENST00000384843 97 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 MIR550A3-201ENST00000390735 95 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 MIR548F5-201ENST00000408421 86 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AC012065.2-201ENST00000421295 375 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.57□□□□□ -1.52
SOX4Q06945 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX4Q06945 CBX3P6-201ENST00000430257 527 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 FTLP19-201ENST00000433300 394 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.57□□□□□ -1.52
SOX4Q06945 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.57□□□□□ -1.52
SOX4Q06945 AL731563.1-201ENST00000442202 214 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 MED28P3-201ENST00000444288 531 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AC090804.1-201ENST00000448870 490 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AC005297.2-201ENST00000450430 606 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AC107399.1-201ENST00000451226 265 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.57□□□□□ -1.52
SOX4Q06945 AC025164.1-201ENST00000496249 478 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 NDUFB5P1-201ENST00000508134 564 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 TXNP6-201ENST00000510190 310 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 RN7SKP219-201ENST00000516825 296 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 MIR4691-201ENST00000583764 85 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 MIR7853-201ENST00000584820 132 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AC105224.1-201ENST00000587055 421 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.57□□□□□ -1.52
SOX4Q06945 GLUD1P4-201ENST00000590914 418 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX4Q06945 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
SOX4Q06945 RMST_9.1-201ENST00000619945 193 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX4Q06945 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 AC091046.3-201ENST00000631455 1574 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX4Q06945 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.57□□□□□ -1.52
SOX4Q06945 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.57□□□□□ -1.52
SOX4Q06945 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 THAP12P4-201ENST00000528321 2266 ntBASIC5.57□□□□□ -1.52
SOX4Q06945 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SOX4Q06945 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX4Q06945 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 AC004972.1-201ENST00000623934 2209 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
SOX4Q06945 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC5.56□□□□□ -1.52
SOX4Q06945 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX4Q06945 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SOX4Q06945 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 RNA5SP455-201ENST00000365190 119 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 AC117470.1-201ENST00000381974 330 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 Y_RNA.414-201ENST00000384011 101 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 RNU1-74P-201ENST00000384108 171 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms