Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC092435.3-201ENST00000565538 3654 ntBASIC3.92□□□□□ -1.78
MSH6P52701 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.92□□□□□ -1.78
MSH6P52701 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSH6P52701 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH6P52701 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSH6P52701 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH6P52701 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH6P52701 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
MSH6P52701 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSH6P52701 U3.11-201ENST00000364476 212 ntBASIC3.91□□□□□ -1.78
MSH6P52701 AC083799.1-201ENST00000366451 910 ntBASIC3.91□□□□□ -1.78
MSH6P52701 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH6P52701 MIR764-201ENST00000390811 85 ntBASIC3.91□□□□□ -1.78
MSH6P52701 ATF1P1-201ENST00000406040 927 ntBASIC3.91□□□□□ -1.78
MSH6P52701 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.91□□□□□ -1.78
MSH6P52701 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH6P52701 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH6P52701 AL606490.7-201ENST00000433136 191 ntBASIC3.91□□□□□ -1.78
MSH6P52701 AC105402.2-201ENST00000438503 358 ntBASIC3.91□□□□□ -1.78
MSH6P52701 AL162389.1-201ENST00000449233 177 ntBASIC3.91□□□□□ -1.78
MSH6P52701 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH6P52701 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC3.91□□□□□ -1.78
MSH6P52701 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH6P52701 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.91□□□□□ -1.78
MSH6P52701 SNORA48.9-201ENST00000516419 162 ntBASIC3.91□□□□□ -1.78
MSH6P52701 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH6P52701 AC109329.2-201ENST00000519658 482 ntBASIC3.91□□□□□ -1.78
MSH6P52701 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.91□□□□□ -1.78
MSH6P52701 AC135803.1-201ENST00000608748 565 ntBASIC3.91□□□□□ -1.78
MSH6P52701 AL591516.1-201ENST00000611326 274 ntBASIC3.91□□□□□ -1.78
MSH6P52701 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC3.91□□□□□ -1.78
MSH6P52701 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSH6P52701 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
MSH6P52701 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.91□□□□□ -1.78
MSH6P52701 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
MSH6P52701 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC3.9□□□□□ -1.78
MSH6P52701 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.9□□□□□ -1.78
MSH6P52701 RPL23AP22-201ENST00000437556 453 ntBASIC3.9□□□□□ -1.78
MSH6P52701 RPL23AP23-201ENST00000452590 471 ntBASIC3.9□□□□□ -1.78
MSH6P52701 RPS4XP6-201ENST00000477670 797 ntBASIC3.9□□□□□ -1.78
MSH6P52701 FABP5P6-201ENST00000510588 409 ntBASIC3.9□□□□□ -1.78
MSH6P52701 RNU6-991P-201ENST00000516168 107 ntBASIC3.9□□□□□ -1.78
MSH6P52701 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.9□□□□□ -1.78
MSH6P52701 SERPINE4P-201ENST00000554978 281 ntBASIC3.9□□□□□ -1.78
MSH6P52701 AC067805.1-201ENST00000559344 470 ntBASIC3.9□□□□□ -1.78
MSH6P52701 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.9□□□□□ -1.78
MSH6P52701 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.9□□□□□ -1.78
MSH6P52701 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
MSH6P52701 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
MSH6P52701 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH6P52701 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH6P52701 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSH6P52701 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
MSH6P52701 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH6P52701 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
MSH6P52701 RN7SKP44-201ENST00000363602 316 ntBASIC3.89□□□□□ -1.79
MSH6P52701 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH6P52701 RNU6-225P-201ENST00000384613 103 ntBASIC3.89□□□□□ -1.79
MSH6P52701 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
MSH6P52701 RPL26P37-201ENST00000411983 438 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AC245291.1-201ENST00000419501 328 ntBASIC3.89□□□□□ -1.79
MSH6P52701 OR2AS1P-201ENST00000427827 319 ntBASIC3.89□□□□□ -1.79
MSH6P52701 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH6P52701 HMGB3P6-201ENST00000444896 598 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AL157827.1-201ENST00000447622 132 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AC104058.1-201ENST00000448028 297 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH6P52701 AC027176.1-201ENST00000560204 514 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AP000919.1-202ENST00000581139 1264 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH6P52701 AC025034.2-201ENST00000623264 286 ntBASIC3.89□□□□□ -1.79
MSH6P52701 MIR7153-201ENST00000637758 57 ntBASIC3.89□□□□□ -1.79
MSH6P52701 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH6P52701 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH6P52701 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSH6P52701 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.89□□□□□ -1.79
MSH6P52701 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSH6P52701 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
MSH6P52701 RNA5SP383-201ENST00000362934 120 ntBASIC3.89□□□□□ -1.79
MSH6P52701 RPS4XP7-201ENST00000406274 780 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC3.89□□□□□ -1.79
MSH6P52701 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSH6P52701 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH6P52701 B3GNT2P1-201ENST00000434960 952 ntBASIC3.89□□□□□ -1.79
MSH6P52701 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
MSH6P52701 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH6P52701 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH6P52701 CLIC4P1-201ENST00000453177 535 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.89□□□□□ -1.79
MSH6P52701 AC108210.2-201ENST00000503681 201 ntBASIC3.89□□□□□ -1.79
MSH6P52701 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.89□□□□□ -1.79
MSH6P52701 AC108471.1-201ENST00000513977 287 ntBASIC3.89□□□□□ -1.79
MSH6P52701 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH6P52701 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC3.89□□□□□ -1.79
MSH6P52701 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.89□□□□□ -1.79
MSH6P52701 AC007424.1-203ENST00000554613 687 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.89□□□□□ -1.79
MSH6P52701 AC079791.1-201ENST00000605356 973 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AC104820.1-201ENST00000624183 307 ntBASIC3.89□□□□□ -1.79
MSH6P52701 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms