Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 OR4A45P-201ENST00000529954 901 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 CCNG2P1-201ENST00000549521 1000 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AL389895.1-201ENST00000554127 252 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.61□□□□□ -1.83
PTPN4P29074 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.61□□□□□ -1.83
PTPN4P29074 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AL139022.2-201ENST00000606934 443 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AC144521.1-201ENST00000607148 956 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AF129408.1-201ENST00000608767 431 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AC022306.3-201ENST00000619930 550 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AP003485.1-201ENST00000625093 753 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AC126544.2-201ENST00000625174 749 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AL732372.2-225ENST00000642124 456 ntBASIC3.61□□□□□ -1.83
PTPN4P29074 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.61□□□□□ -1.83
PTPN4P29074 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PTPN4P29074 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.61□□□□□ -1.83
PTPN4P29074 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
PTPN4P29074 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN4P29074 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN4P29074 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN4P29074 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.6□□□□□ -1.83
PTPN4P29074 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN4P29074 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN4P29074 HMGB1P5-201ENST00000255320 642 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 RNVU1-3-201ENST00000364313 161 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 MIR649-201ENST00000384843 97 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 MIR620-201ENST00000385232 95 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
PTPN4P29074 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 SKINT1L-201ENST00000401057 817 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AC092638.1-201ENST00000411966 1275 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 SYF2P2-201ENST00000417620 583 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 HMGB3P20-201ENST00000417997 600 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 TCEA1P2-201ENST00000420496 906 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AL354692.1-201ENST00000423044 315 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 HSFY1P1-201ENST00000423928 1178 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 RPP40P1-201ENST00000426762 456 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.6□□□□□ -1.83
PTPN4P29074 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.6□□□□□ -1.83
PTPN4P29074 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.6□□□□□ -1.83
PTPN4P29074 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.6□□□□□ -1.83
PTPN4P29074 FCF1P6-201ENST00000456841 595 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.6□□□□□ -1.83
PTPN4P29074 RN7SKP244-201ENST00000516513 307 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 snoZ278.1-201ENST00000517059 112 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 RN7SKP289-201ENST00000517244 295 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.6□□□□□ -1.83
PTPN4P29074 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.6□□□□□ -1.83
PTPN4P29074 IGKV2D-19-201ENST00000523346 262 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PTPN4P29074 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.6□□□□□ -1.83
PTPN4P29074 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.6□□□□□ -1.83
PTPN4P29074 AC122134.1-202ENST00000569111 1201 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.6□□□□□ -1.83
PTPN4P29074 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.6□□□□□ -1.83
PTPN4P29074 AC008507.1-201ENST00000587506 734 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 AL163642.2-201ENST00000604722 1019 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AC024933.1-201ENST00000608472 348 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AL590282.1-201ENST00000610379 1136 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AL512427.1-201ENST00000618593 349 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 VN1R7P-201ENST00000619242 903 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AC012314.7-201ENST00000619693 93 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 AC092184.1-201ENST00000625042 715 ntBASIC3.6□□□□□ -1.83
PTPN4P29074 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.6□□□□□ -1.83
PTPN4P29074 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.6□□□□□ -1.83
PTPN4P29074 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
PTPN4P29074 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.6□□□□□ -1.83
PTPN4P29074 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN4P29074 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN4P29074 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
PTPN4P29074 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PTPN4P29074 Y_RNA.333-201ENST00000365274 102 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 RNU6-805P-201ENST00000365643 106 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AC007066.1-201ENST00000392902 381 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AP000567.1-201ENST00000406413 156 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AL139098.1-201ENST00000407291 389 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 RNA5SP293-201ENST00000410527 113 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 RNA5SP31-201ENST00000411144 127 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN4P29074 AL133384.1-201ENST00000412744 351 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AC013410.2-201ENST00000422627 201 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN4P29074 AC114973.1-201ENST00000429057 632 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 Z74696.2-201ENST00000436514 498 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN4P29074 AL662791.1-201ENST00000441992 928 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 SETD6P1-201ENST00000444575 317 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 RPL7P59-201ENST00000447700 943 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AC004022.1-201ENST00000447766 1066 ntBASIC3.59□□□□□ -1.83
PTPN4P29074 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.59□□□□□ -1.83
PTPN4P29074 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.59□□□□□ -1.83
PTPN4P29074 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.59□□□□□ -1.83
PTPN4P29074 KLRA1P-201ENST00000503499 986 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms