Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC104623.2-202ENST00000623477 4002 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC027287.1-201ENST00000553115 1453 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RNY4P16-201ENST00000364768 94 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RNU6-282P-201ENST00000365357 103 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RNU6-456P-201ENST00000384493 107 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 Z97832.1-201ENST00000402490 328 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AL035079.1-201ENST00000405210 287 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RNU2-62P-201ENST00000410868 191 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 USP9YP6-201ENST00000413550 854 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC127526.1-201ENST00000417526 366 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RPL30P16-201ENST00000419341 429 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RPL34P20-201ENST00000442771 351 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC108059.3-201ENST00000456388 214 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RNA5SP103-201ENST00000459503 118 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC091180.1-201ENST00000462104 372 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RN7SL441P-201ENST00000492388 296 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 RNU6-528P-201ENST00000516926 100 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 OR4P1P-201ENST00000530808 1136 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 MIR4646-201ENST00000580775 63 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 MIR4691-201ENST00000583764 85 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AL627230.1-201ENST00000613077 211 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AL591926.8-201ENST00000616876 211 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC002550.2-201ENST00000621246 394 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC012150.2-201ENST00000621300 544 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC040168.1-201ENST00000623594 991 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 MIR1321-201ENST00000637766 79 ntBASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
TRIM39Q9HCM9 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5□□□□□ -1.61
TRIM39Q9HCM9 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
TRIM39Q9HCM9 ANAPC1P1-201ENST00000426186 2145 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5□□□□□ -1.61
TRIM39Q9HCM9 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
TRIM39Q9HCM9 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5□□□□□ -1.61
TRIM39Q9HCM9 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 Y_RNA.409-201ENST00000383990 98 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 Y_RNA.493-201ENST00000384422 102 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 RNU6-114P-201ENST00000384704 105 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 RAP1BP3-201ENST00000407180 549 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AL603766.1-201ENST00000407763 664 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 EIF4A1P3-201ENST00000411521 244 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 MTCO1P20-201ENST00000425366 358 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 MTCO2P19-201ENST00000427513 598 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 BX323845.1-201ENST00000432417 179 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AL662791.1-201ENST00000441992 928 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 RPL29P29-201ENST00000448725 423 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 MTND3P10-201ENST00000450967 341 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC022364.2-201ENST00000457963 554 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AL049874.2-201ENST00000492636 288 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC010350.1-201ENST00000504908 231 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC074344.1-201ENST00000512823 224 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 NRON-201ENST00000517270 370 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5□□□□□ -1.61
TRIM39Q9HCM9 OR5AN2P-201ENST00000534535 896 ntBASIC5□□□□□ -1.61
TRIM39Q9HCM9 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms