Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL035423.1-201ENST00000420331 213 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 HMGN2P31-201ENST00000432430 273 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 MTCYBP11-201ENST00000447254 1109 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 MTCO1P48-201ENST00000448024 1096 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RPL21P134-201ENST00000453468 483 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AL133477.1-201ENST00000457472 514 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 USP9YP25-201ENST00000457708 443 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AL133162.1-201ENST00000463228 453 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RPL37P6-202ENST00000464216 403 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RPL21P103-201ENST00000479921 488 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC098862.1-201ENST00000504991 413 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC109445.1-201ENST00000512356 383 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RN7SKP234-201ENST00000517173 224 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC022695.1-201ENST00000522089 237 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 IGKV2D-19-201ENST00000523346 262 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 ZNF705CP-201ENST00000530515 889 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC125611.1-201ENST00000549563 229 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 LSM6P2-201ENST00000552208 177 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC015813.4-201ENST00000610469 179 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC103858.2-201ENST00000621471 543 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC095050.2-201ENST00000510748 1458 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 SNORD74.4-201ENST00000364129 80 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 RNU6-1226P-201ENST00000384317 107 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC007066.1-201ENST00000392902 381 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 SSXP10-201ENST00000402595 565 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 JKAMPP1-201ENST00000413804 919 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 SYF2P2-201ENST00000417620 583 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC068533.1-201ENST00000418542 415 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC083863.1-201ENST00000438811 231 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 PRSS3P4-201ENST00000453323 162 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 TRBV26-201ENST00000456572 344 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC146507.1-201ENST00000468335 354 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC010301.1-201ENST00000473936 355 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 FABP5P12-201ENST00000515543 389 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 RN7SKP277-201ENST00000516895 283 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 CBX3P5-201ENST00000552017 521 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 CENPUP2-201ENST00000555897 1186 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC138915.2-201ENST00000569776 97 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 GAS5-AS1-201ENST00000602767 694 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 SRGNP1-201ENST00000603392 451 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC083899.3-201ENST00000603413 594 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 DUXAP3-201ENST00000603616 594 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC007566.2-201ENST00000603642 413 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC012468.1-201ENST00000604888 430 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC079395.3-201ENST00000615161 484 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AC120349.2-201ENST00000625002 298 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 MIR1322-201ENST00000638013 71 ntBASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC3Q9BQI4 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms