Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 RNA5SP258-201ENST00000362750 119 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 RNU6-328P-201ENST00000390887 106 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 NDUFS5P1-201ENST00000405668 289 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 RPL7P28-201ENST00000437739 740 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 OR2AO1P-201ENST00000476497 403 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC004453.1-201ENST00000487895 408 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC008526.1-201ENST00000509149 338 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC100784.1-201ENST00000522790 310 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 HIGD1AP5-201ENST00000529959 259 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 ASB8-202ENST00000535055 657 ntTSL 2 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 MIR5583-1-201ENST00000580941 59 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC107871.2-201ENST00000612894 502 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 AC000123.2-201ENST00000623124 461 ntBASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SH3RF1Q7Z6J0 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 TTC41P-205ENST00000551270 3963 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 THAP12P4-201ENST00000528321 2266 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 RNU6-490P-201ENST00000362985 107 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 Y_RNA.428-201ENST00000384078 102 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 Y_RNA.493-201ENST00000384422 102 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AL590762.4-201ENST00000425885 253 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AL139148.1-201ENST00000427122 680 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 PPIAP13-201ENST00000434706 478 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AC019185.1-201ENST00000442718 389 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 RPS4XP1-201ENST00000482189 787 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 RPL22P13-201ENST00000493291 347 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 Y_RNA.708-201ENST00000516950 96 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AC135001.1-201ENST00000544546 283 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AL713866.2-201ENST00000603579 219 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AC104695.3-201ENST00000604052 296 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AL355810.1-201ENST00000614629 552 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 RPSAP73-201ENST00000614820 330 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AL355365.1-201ENST00000616480 294 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 NLRP3P1-201ENST00000622303 1785 ntBASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SH3RF1Q7Z6J0 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 MFSD8-219ENST00000641228 2559 ntBASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 Y_RNA.447-201ENST00000384184 113 ntBASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 RNU6-33P-201ENST00000384793 107 ntBASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 SNORA75.6-201ENST00000391318 127 ntBASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 AC005042.1-201ENST00000393397 800 ntBASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 AL359643.1-201ENST00000404109 423 ntBASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 PSMA6P3-201ENST00000428242 164 ntBASIC6.53□□□□□ -1.36
SH3RF1Q7Z6J0 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms