Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC008127.2-201ENST00000549925 1075 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 MIR4697-201ENST00000582977 78 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC069304.2-201ENST00000605154 435 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC080013.3-201ENST00000606839 578 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC092653.1-201ENST00000608509 531 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC006329.2-201ENST00000611491 394 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC008083.4-201ENST00000615076 444 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC079395.3-201ENST00000615161 484 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC069209.1-201ENST00000619282 651 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AC112484.5-201ENST00000624189 228 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 AP000676.4-201ENST00000624659 623 ntBASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.8□□□□□ -1.8
NUP54Q7Z3B4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 OR11H4-201ENST00000315409 1082 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 SNORD74.4-201ENST00000364129 80 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 MIR591-201ENST00000385290 95 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 TAF9BP1-201ENST00000396646 746 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AL450338.1-201ENST00000407987 512 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC068533.2-201ENST00000411872 306 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AMD1P2-201ENST00000412936 992 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 NIPA2P1-201ENST00000426223 976 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 MTCO2P20-201ENST00000437339 673 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 HMGN2P20-201ENST00000437531 273 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 FGF7P5-201ENST00000441829 291 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 SLC31A1P1-201ENST00000451221 567 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 NECAP1P2-201ENST00000455668 727 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AL049830.2-201ENST00000480072 201 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 HMGB1P28-201ENST00000507778 552 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC093824.1-201ENST00000508796 343 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC112673.1-201ENST00000513168 575 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC092851.1-201ENST00000535964 478 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC087465.1-201ENST00000560574 245 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC012417.1-201ENST00000582307 1039 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AL451086.1-201ENST00000605596 223 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AP003392.5-201ENST00000607857 415 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC140725.3-201ENST00000616193 880 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 AC018755.4-201ENST00000619715 454 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NUP54Q7Z3B4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AP000776.1-201ENST00000530032 1663 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 GDI2P1-201ENST00000429312 1336 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AC007256.1-201ENST00000392253 2765 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 FAM133CP-201ENST00000332869 704 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 SNORD82-201ENST00000365530 70 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AC099677.1-201ENST00000420575 175 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AL139421.1-201ENST00000423010 169 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AL590103.1-201ENST00000434488 307 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AC127537.2-201ENST00000439258 465 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 TPTE2P3-201ENST00000441562 1189 ntBASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.78□□□□□ -1.8
NUP54Q7Z3B4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms