Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC093698.1-201ENST00000423843 571 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 RPL39P6-201ENST00000448289 150 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AL162151.2-201ENST00000448875 158 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 RPL23AP35-201ENST00000451906 501 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC104073.1-201ENST00000451988 151 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 UQCRHP4-201ENST00000471686 272 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 RPL31P13-201ENST00000484151 370 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC104685.1-201ENST00000502445 371 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC104057.1-201ENST00000515547 497 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 RNU6-583P-201ENST00000516012 92 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 IGKV2D-36-201ENST00000518643 226 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC007834.2-201ENST00000536310 343 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AL389895.1-201ENST00000554127 252 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC027807.1-201ENST00000559921 996 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC106791.2-201ENST00000604680 391 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC012468.1-201ENST00000604888 430 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AL450489.1-201ENST00000612071 468 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AC243773.3-201ENST00000613270 256 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 AL136981.2-201ENST00000617319 734 ntBASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 TEX41-256ENST00000626411 368 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PDLIM3Q53GG5 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 FAM91A3P-201ENST00000456826 2544 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 SNORA7.2-201ENST00000364446 145 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 MIR607-201ENST00000385241 96 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 OR8G2P-201ENST00000412796 908 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 RPS23P10-201ENST00000416185 486 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC004552.1-201ENST00000419089 348 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC098592.1-201ENST00000419352 333 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 USP9YP26-201ENST00000421008 661 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC069157.1-201ENST00000421749 137 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AL022400.1-201ENST00000423946 935 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 UBE2D3P1-201ENST00000436669 444 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 ABCF2P2-201ENST00000450549 296 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 MTCO3P16-201ENST00000454456 754 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 RPL18AP17-201ENST00000455326 198 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 TRBV26-201ENST00000456572 344 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 RPS26P3-201ENST00000470205 348 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 BET1P1-201ENST00000482276 359 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC090543.2-201ENST00000483963 348 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC004057.1-201ENST00000485827 348 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC147055.4-201ENST00000504399 745 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC093534.1-201ENST00000504977 132 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 PARP4P3-201ENST00000510265 317 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 MRPS33P3-201ENST00000513456 322 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 MTCYBP43-201ENST00000513621 740 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 RNU6-1129P-201ENST00000515964 104 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 RNU6-150P-201ENST00000516237 95 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 RNU6-759P-201ENST00000516740 103 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 SNORA70.24-201ENST00000517233 118 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 IGLVIV-65-201ENST00000517313 360 ntBASIC3.59□□□□□ -1.83
PDLIM3Q53GG5 AC105185.1-201ENST00000518705 535 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms