Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
SOX4Q06945 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SOX4Q06945 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
SOX4Q06945 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.6□□□□□ -1.51
SOX4Q06945 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.6□□□□□ -1.51
SOX4Q06945 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.6□□□□□ -1.51
SOX4Q06945 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SOX4Q06945 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX4Q06945 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX4Q06945 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX4Q06945 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX4Q06945 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.59□□□□□ -1.51
SOX4Q06945 OR1S2-201ENST00000302592 978 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX4Q06945 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC5.59□□□□□ -1.51
SOX4Q06945 Y_RNA.193-201ENST00000363979 102 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 SNORA51.6-201ENST00000384151 125 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 RNU6-1013P-201ENST00000384180 107 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 MIR589-201ENST00000385238 99 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX4Q06945 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 PRPF38AP2-201ENST00000438179 851 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 RPS29P10-201ENST00000439197 166 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 AL137792.2-201ENST00000443484 235 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 HMGB3P22-202ENST00000451823 572 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX4Q06945 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 RPL35AP28-201ENST00000459730 331 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 ABCC13-202ENST00000463099 3842 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 RN7SL197P-201ENST00000466981 299 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AC097484.1-201ENST00000471148 389 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 RPL5P22-201ENST00000480199 884 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 RN7SL97P-201ENST00000486780 299 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AC083904.1-201ENST00000487828 231 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 OR5B10P-201ENST00000532869 642 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX4Q06945 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX4Q06945 AC007938.3-201ENST00000604965 623 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AP005432.2-201ENST00000608162 586 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AC093799.2-201ENST00000610062 578 ntBASIC5.59□□□□□ -1.51
SOX4Q06945 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX4Q06945 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
SOX4Q06945 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX4Q06945 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX4Q06945 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX4Q06945 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX4Q06945 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
SOX4Q06945 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
SOX4Q06945 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX4Q06945 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.59□□□□□ -1.52
SOX4Q06945 AP001284.1-201ENST00000528393 2118 ntBASIC5.59□□□□□ -1.52
SOX4Q06945 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.59□□□□□ -1.52
SOX4Q06945 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.59□□□□□ -1.52
SOX4Q06945 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
SOX4Q06945 MTCO1P7-201ENST00000419523 1542 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SOX4Q06945 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
SOX4Q06945 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX4Q06945 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.58□□□□□ -1.52
SOX4Q06945 Y_RNA.367-201ENST00000365544 101 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.58□□□□□ -1.52
SOX4Q06945 AL645733.1-201ENST00000402250 217 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 PRRC2CP1-201ENST00000404428 159 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 RNU2-22P-201ENST00000411266 212 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 AC092832.1-201ENST00000422934 400 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 AC096632.1-201ENST00000427395 310 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 OR4K11P-201ENST00000431829 904 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX4Q06945 RPL37P1-201ENST00000432310 284 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.58□□□□□ -1.52
SOX4Q06945 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX4Q06945 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX4Q06945 RPL34P20-201ENST00000442771 351 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.58□□□□□ -1.52
SOX4Q06945 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX4Q06945 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 RN7SL814P-201ENST00000487715 300 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 AC093267.1-201ENST00000489176 961 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 RPL23AP72-201ENST00000492447 435 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX4Q06945 AC106872.2-201ENST00000494303 480 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX4Q06945 AC091885.1-201ENST00000506658 268 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 AC021146.1-201ENST00000511202 716 ntBASIC5.58□□□□□ -1.52
SOX4Q06945 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.58□□□□□ -1.52
SOX4Q06945 MTCO2P24-201ENST00000515611 426 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms