Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
RNF4P78317 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
RNF4P78317 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
RNF4P78317 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.14□□□□□ -1.59
RNF4P78317 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
RNF4P78317 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
RNF4P78317 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.14□□□□□ -1.59
RNF4P78317 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
RNF4P78317 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.14□□□□□ -1.59
RNF4P78317 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
RNF4P78317 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.13□□□□□ -1.59
RNF4P78317 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
RNF4P78317 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 HSPE1P11-201ENST00000339579 310 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RN7SKP160-201ENST00000363804 340 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RNVU1-3-201ENST00000364313 161 ntBASIC5.13□□□□□ -1.59
RNF4P78317 SNORA4.3-201ENST00000365564 137 ntBASIC5.13□□□□□ -1.59
RNF4P78317 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 RNU6-43P-201ENST00000384302 107 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RPL26P29-201ENST00000415623 438 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.13□□□□□ -1.59
RNF4P78317 AC069213.2-201ENST00000420238 366 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC092162.1-201ENST00000432828 434 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AL118520.1-201ENST00000450770 291 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC5.13□□□□□ -1.59
RNF4P78317 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.13□□□□□ -1.59
RNF4P78317 AL162395.1-201ENST00000457882 422 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC100832.1-201ENST00000471945 383 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RN7SL583P-201ENST00000475692 287 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC126389.1-201ENST00000477436 290 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC023424.1-201ENST00000496058 459 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RN7SL591P-201ENST00000496150 292 ntBASIC5.13□□□□□ -1.59
RNF4P78317 COX7A2P2-201ENST00000505291 250 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC011411.1-201ENST00000509592 876 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RNU6-1170P-201ENST00000515974 106 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RNU6-513P-201ENST00000516104 104 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RNU6-273P-201ENST00000516937 96 ntBASIC5.13□□□□□ -1.59
RNF4P78317 RN7SKP99-201ENST00000517028 307 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.13□□□□□ -1.59
RNF4P78317 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.13□□□□□ -1.59
RNF4P78317 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC5.13□□□□□ -1.59
RNF4P78317 AC122688.1-201ENST00000541494 223 ntBASIC5.13□□□□□ -1.59
RNF4P78317 LSM3P2-201ENST00000551246 273 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.13□□□□□ -1.59
RNF4P78317 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.13□□□□□ -1.59
RNF4P78317 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.13□□□□□ -1.59
RNF4P78317 POLR3GP2-201ENST00000588366 668 ntBASIC5.13□□□□□ -1.59
RNF4P78317 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC5.13□□□□□ -1.59
RNF4P78317 CTHRC1P1-201ENST00000605383 469 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.13□□□□□ -1.59
RNF4P78317 uc_338.15-201ENST00000615470 191 ntBASIC5.13□□□□□ -1.59
RNF4P78317 MIR8080-201ENST00000622224 89 ntBASIC5.13□□□□□ -1.59
RNF4P78317 AC099494.2-201ENST00000623371 978 ntBASIC5.13□□□□□ -1.59
RNF4P78317 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
RNF4P78317 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 AL031119.1-201ENST00000404707 1879 ntBASIC5.13□□□□□ -1.59
RNF4P78317 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.13□□□□□ -1.59
RNF4P78317 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
RNF4P78317 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.12□□□□□ -1.59
RNF4P78317 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
RNF4P78317 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.12□□□□□ -1.59
RNF4P78317 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 SNORA51.1-201ENST00000363243 140 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RNU6-511P-201ENST00000363496 107 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RNA5SP234-201ENST00000363916 119 ntBASIC5.12□□□□□ -1.59
RNF4P78317 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 RNU6-474P-201ENST00000384243 107 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RNU6-738P-201ENST00000384531 106 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RNU6-278P-201ENST00000390945 109 ntBASIC5.12□□□□□ -1.59
RNF4P78317 UBE2V1P2-201ENST00000397758 440 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RNU2-39P-201ENST00000410604 198 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RN7SKP17-201ENST00000411242 351 ntBASIC5.12□□□□□ -1.59
RNF4P78317 HMGN1P24-201ENST00000412282 298 ntBASIC5.12□□□□□ -1.59
RNF4P78317 OR2AS1P-201ENST00000427827 319 ntBASIC5.12□□□□□ -1.59
RNF4P78317 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 LYPLA1P1-201ENST00000434514 622 ntBASIC5.12□□□□□ -1.59
RNF4P78317 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.12□□□□□ -1.59
RNF4P78317 SNORD121B-201ENST00000458838 81 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RN7SL184P-201ENST00000488308 297 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RN7SL547P-201ENST00000490793 290 ntBASIC5.12□□□□□ -1.59
RNF4P78317 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.12□□□□□ -1.59
RNF4P78317 ATP5LP3-201ENST00000514223 304 ntBASIC5.12□□□□□ -1.59
RNF4P78317 RNA5SP503-201ENST00000517047 117 ntBASIC5.12□□□□□ -1.59
RNF4P78317 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.12□□□□□ -1.59
RNF4P78317 IGLVIV-53-201ENST00000520107 367 ntBASIC5.12□□□□□ -1.59
RNF4P78317 AP000857.1-201ENST00000532151 543 ntBASIC5.12□□□□□ -1.59
RNF4P78317 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms