Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC091959.2-201ENST00000477363 321 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 CEACAMP10-202ENST00000495431 496 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 HMGB1P3-201ENST00000502802 616 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AIG1P1-201ENST00000503376 148 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC2.18□□□□□ -2.06
FOXA3P55318 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA3P55318 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.18□□□□□ -2.06
FOXA3P55318 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA3P55318 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA3P55318 AC104115.2-201ENST00000523026 687 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA3P55318 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.18□□□□□ -2.06
FOXA3P55318 AC007458.1-201ENST00000542812 373 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA3P55318 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
FOXA3P55318 MIR3670-2-201ENST00000582974 65 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 MIR3670-1-201ENST00000584160 65 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 MIR3670-3-201ENST00000584855 65 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AP001029.3-201ENST00000588063 596 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 CKS1BP3-201ENST00000600888 237 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AP000787.2-201ENST00000604432 568 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 HSPE1P14-201ENST00000605812 302 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 MIR6748-201ENST00000610433 71 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.18□□□□□ -2.06
FOXA3P55318 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
FOXA3P55318 MIR3670-4-201ENST00000612260 65 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AL355493.4-201ENST00000618530 292 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AC099506.2-201ENST00000623074 221 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AC020923.1-201ENST00000624021 917 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 FRG1DP-201ENST00000635586 771 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AC138915.1-201ENST00000565427 1685 ntBASIC2.18□□□□□ -2.06
FOXA3P55318 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.18□□□□□ -2.06
FOXA3P55318 AL049781.1-201ENST00000623195 3585 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
FOXA3P55318 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
FOXA3P55318 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
FOXA3P55318 RNU6-799P-201ENST00000363567 107 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 MIR512-1-201ENST00000384913 84 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 FO393413.1-201ENST00000402892 195 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 HMGN2P35-201ENST00000412164 270 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 RAB9AP3-201ENST00000412737 573 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 CASKP1-201ENST00000412870 582 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC2.17□□□□□ -2.06
FOXA3P55318 MTCO3P4-201ENST00000419236 787 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 YPEL5P1-201ENST00000419731 367 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA3P55318 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA3P55318 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA3P55318 MTCO1P45-201ENST00000431457 267 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 KCTD10P1-201ENST00000434203 625 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA3P55318 AC016696.1-201ENST00000446949 318 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 RAB9AP1-201ENST00000449393 573 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 NUTF2P7-201ENST00000453086 375 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 snoU13.24-201ENST00000458998 104 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 RN7SL601P-201ENST00000471221 293 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 GAPDHP39-201ENST00000481866 979 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 SEM1P1-201ENST00000506694 209 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AC009901.1-201ENST00000506703 541 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AC008565.1-201ENST00000509046 885 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
FOXA3P55318 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.17□□□□□ -2.06
FOXA3P55318 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC2.17□□□□□ -2.06
FOXA3P55318 MTND4LP31-201ENST00000514859 294 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 FAM60DP-201ENST00000524174 632 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA3P55318 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA3P55318 OSBPL9P3-201ENST00000534523 595 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.17□□□□□ -2.06
FOXA3P55318 AC004486.1-201ENST00000546846 233 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA3P55318 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA3P55318 AC138761.3-201ENST00000579993 334 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 MIR3605-201ENST00000583214 100 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA3P55318 UBL5P2-201ENST00000583788 219 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA3P55318 ZNF92P3-201ENST00000596594 954 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AL590410.1-201ENST00000617925 333 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AC091953.5-201ENST00000622919 233 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA3P55318 AC091564.4-201ENST00000533934 2194 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
FOXA3P55318 ZNF807-201ENST00000328088 1707 ntBASIC2.17□□□□□ -2.06
FOXA3P55318 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
FOXA3P55318 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.17□□□□□ -2.06
FOXA3P55318 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA3P55318 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA3P55318 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
FOXA3P55318 RN7SKP227-201ENST00000364445 330 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA3P55318 MIR490-201ENST00000384865 128 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AL121972.1-201ENST00000402023 252 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 RNU2-65P-201ENST00000410162 185 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 RN7SKP263-201ENST00000411194 309 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 RPL7P8-201ENST00000411964 730 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 RAD23BP2-201ENST00000416003 1207 ntBASIC2.16□□□□□ -2.06
FOXA3P55318 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.16□□□□□ -2.06
FOXA3P55318 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms