Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR504-201ENST00000385065 83 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 HNRNPDP2-201ENST00000406475 478 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 PTGES3P2-201ENST00000407942 482 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 TXNL1P1-201ENST00000429528 554 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 MTCYBP31-201ENST00000438855 1122 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 VN1R96P-201ENST00000446052 858 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
COL4A4P53420 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.2□□□□□ -1.9
COL4A4P53420 SNORD109B-201ENST00000458961 67 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 SNORD109A-201ENST00000459128 67 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC092902.1-201ENST00000486999 259 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A4P53420 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.2□□□□□ -1.9
COL4A4P53420 RN7SKP31-201ENST00000516354 278 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC109329.2-201ENST00000519658 482 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AP003033.1-201ENST00000527244 415 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A4P53420 AC092851.1-201ENST00000535964 478 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.2□□□□□ -1.9
COL4A4P53420 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.2□□□□□ -1.9
COL4A4P53420 AP000919.1-202ENST00000581139 1264 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC110760.3-201ENST00000598794 467 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AL671309.1-201ENST00000603750 544 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC078899.5-201ENST00000612475 178 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC009032.1-201ENST00000617574 431 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AL355493.4-201ENST00000618530 292 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AL590808.1-201ENST00000618696 141 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC004943.3-201ENST00000624116 600 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC091903.1-201ENST00000624322 454 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AP000676.4-201ENST00000624659 623 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AC004808.1-201ENST00000627671 721 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 AL356118.1-201ENST00000635272 1078 ntBASIC3.2□□□□□ -1.9
COL4A4P53420 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL4A4P53420 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC3.19□□□□□ -1.9
COL4A4P53420 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL4A4P53420 DDX43P2-201ENST00000604753 1354 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
COL4A4P53420 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
COL4A4P53420 MTCO2P23-201ENST00000425216 680 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 ISCA1P6-201ENST00000427740 390 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 AC073508.1-201ENST00000428866 656 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 VN1R108P-201ENST00000431580 830 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 EIF2S2P4-201ENST00000461070 984 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 RPS17P11-201ENST00000474297 293 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 MTCYBP35-201ENST00000503630 1137 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.19□□□□□ -1.9
COL4A4P53420 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL4A4P53420 SNORA64.4-201ENST00000516632 81 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 MTCO1P47-201ENST00000523889 1271 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL4A4P53420 UBTFL10-201ENST00000528532 562 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 AP002812.4-201ENST00000532139 286 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.19□□□□□ -1.9
COL4A4P53420 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC3.19□□□□□ -1.9
COL4A4P53420 AC009097.3-201ENST00000563557 1018 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.19□□□□□ -1.9
COL4A4P53420 AC080013.6-201ENST00000606185 215 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 AC018690.1-201ENST00000608144 626 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 AC079416.3-201ENST00000624479 549 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 AC013437.2-201ENST00000639587 677 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.19□□□□□ -1.9
COL4A4P53420 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL4A4P53420 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL4A4P53420 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL4A4P53420 AL049780.3-201ENST00000624612 1583 ntBASIC3.19□□□□□ -1.9
COL4A4P53420 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC3.19□□□□□ -1.9
COL4A4P53420 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
COL4A4P53420 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 OR52B1P-201ENST00000316506 909 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 U3.6-201ENST00000363622 211 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.18□□□□□ -1.9
COL4A4P53420 SNORD116-2-201ENST00000384274 95 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 SNORD116-6-201ENST00000384711 96 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 SNORD15B-201ENST00000384714 146 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL4A4P53420 MIR887-201ENST00000401258 79 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 RNU2-52P-201ENST00000410680 190 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 RN7SKP247-201ENST00000411094 308 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.18□□□□□ -1.9
COL4A4P53420 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A4P53420 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.18□□□□□ -1.9
COL4A4P53420 RN7SL442P-201ENST00000473804 320 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.18□□□□□ -1.9
COL4A4P53420 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.18□□□□□ -1.9
COL4A4P53420 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A4P53420 RN7SKP265-201ENST00000516448 223 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 RN7SKP272-201ENST00000516988 232 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.18□□□□□ -1.9
COL4A4P53420 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.18□□□□□ -1.9
COL4A4P53420 AC025857.1-201ENST00000525252 377 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.18□□□□□ -1.9
COL4A4P53420 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.18□□□□□ -1.9
COL4A4P53420 YWHAZP1-201ENST00000556286 722 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.18□□□□□ -1.9
COL4A4P53420 AC079395.3-201ENST00000615161 484 ntBASIC3.18□□□□□ -1.9
COL4A4P53420 AC104307.1-201ENST00000616142 196 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms