Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR1182-201ENST00000408363 97 ntBASIC4.7□□□□□ -1.66
MSX2P35548 SNORA77-201ENST00000408716 125 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX2P35548 TPMTP2-201ENST00000414372 726 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC008280.1-201ENST00000418851 412 ntBASIC4.7□□□□□ -1.66
MSX2P35548 EIF1P3-201ENST00000423841 334 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC104837.2-201ENST00000427236 424 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX2P35548 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX2P35548 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX2P35548 RPL23AP15-201ENST00000450202 459 ntBASIC4.7□□□□□ -1.66
MSX2P35548 SBDSP1-204ENST00000453858 737 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC083798.1-201ENST00000472671 131 ntBASIC4.7□□□□□ -1.66
MSX2P35548 RN7SL717P-201ENST00000478343 297 ntBASIC4.7□□□□□ -1.66
MSX2P35548 FAM172BP-201ENST00000487497 1089 ntBASIC4.7□□□□□ -1.66
MSX2P35548 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX2P35548 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 RNU6-488P-201ENST00000515918 99 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX2P35548 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC022616.6-201ENST00000520479 119 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX2P35548 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX2P35548 COX6CP8-201ENST00000522620 226 ntBASIC4.7□□□□□ -1.66
MSX2P35548 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX2P35548 OR5M2P-201ENST00000529003 936 ntBASIC4.7□□□□□ -1.66
MSX2P35548 BRD9P1-201ENST00000529855 560 ntBASIC4.7□□□□□ -1.66
MSX2P35548 MIR5186-201ENST00000577504 120 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC090312.1-201ENST00000580637 348 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX2P35548 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX2P35548 AC018638.8-201ENST00000588755 281 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX2P35548 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.7□□□□□ -1.66
MSX2P35548 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX2P35548 AC078899.5-201ENST00000612475 178 ntBASIC4.7□□□□□ -1.66
MSX2P35548 MIR6826-201ENST00000617808 98 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AC009237.17-201ENST00000618111 748 ntBASIC4.7□□□□□ -1.66
MSX2P35548 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.7□□□□□ -1.66
MSX2P35548 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX2P35548 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.7□□□□□ -1.66
MSX2P35548 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSX2P35548 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.7□□□□□ -1.66
MSX2P35548 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.7□□□□□ -1.66
MSX2P35548 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 NMD3P1-201ENST00000439704 1488 ntBASIC4.69□□□□□ -1.66
MSX2P35548 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.69□□□□□ -1.66
MSX2P35548 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
MSX2P35548 OR13C1P-202ENST00000641378 2919 ntBASIC4.69□□□□□ -1.66
MSX2P35548 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 RPL23AP57-201ENST00000332361 466 ntBASIC4.69□□□□□ -1.66
MSX2P35548 Y_RNA.166-201ENST00000363730 102 ntBASIC4.69□□□□□ -1.66
MSX2P35548 RN7SKP113-201ENST00000363891 295 ntBASIC4.69□□□□□ -1.66
MSX2P35548 RNU6-359P-201ENST00000365466 108 ntBASIC4.69□□□□□ -1.66
MSX2P35548 Y_RNA.381-201ENST00000365666 102 ntBASIC4.69□□□□□ -1.66
MSX2P35548 RNU6-444P-201ENST00000383988 108 ntBASIC4.69□□□□□ -1.66
MSX2P35548 RNA5SP339-201ENST00000390987 122 ntBASIC4.69□□□□□ -1.66
MSX2P35548 RPL23AP32-201ENST00000395315 459 ntBASIC4.69□□□□□ -1.66
MSX2P35548 RPS4XP8-201ENST00000402039 771 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL078604.1-201ENST00000404609 466 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL590004.1-201ENST00000405321 300 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX2P35548 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX2P35548 BTF3L4P3-201ENST00000418879 476 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX2P35548 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX2P35548 AC005534.2-201ENST00000431047 433 ntBASIC4.69□□□□□ -1.66
MSX2P35548 RPL37P1-201ENST00000432310 284 ntBASIC4.69□□□□□ -1.66
MSX2P35548 KCTD9P3-201ENST00000434597 1169 ntBASIC4.69□□□□□ -1.66
MSX2P35548 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.69□□□□□ -1.66
MSX2P35548 NDUFA5P4-201ENST00000436704 385 ntBASIC4.69□□□□□ -1.66
MSX2P35548 SEPT14P3-201ENST00000439401 183 ntBASIC4.69□□□□□ -1.66
MSX2P35548 MTCYBP6-201ENST00000441810 138 ntBASIC4.69□□□□□ -1.66
MSX2P35548 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 RPS11P7-201ENST00000442125 465 ntBASIC4.69□□□□□ -1.66
MSX2P35548 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX2P35548 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
MSX2P35548 AL732372.2-207ENST00000445840 183 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX2P35548 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX2P35548 SEPT14P2-201ENST00000453405 183 ntBASIC4.69□□□□□ -1.66
MSX2P35548 YWHAEP1-201ENST00000453697 763 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AC026410.2-201ENST00000460281 156 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX2P35548 AC010683.1-201ENST00000473673 378 ntBASIC4.69□□□□□ -1.66
MSX2P35548 FTH1P24-201ENST00000503502 462 ntBASIC4.69□□□□□ -1.66
MSX2P35548 SEPT14P4-201ENST00000513445 186 ntBASIC4.69□□□□□ -1.66
MSX2P35548 RNU6-201P-201ENST00000517100 61 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms