Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC012213.4-201ENST00000606457 354 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 AC017076.1-201ENST00000607613 578 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 AC006111.3-201ENST00000622137 383 ntBASIC3.33□□□□□ -1.88
SCN4AP35499 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SCN4AP35499 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SCN4AP35499 MIR148B-201ENST00000362252 99 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 RNU4-23P-201ENST00000362839 140 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 RNU6-328P-201ENST00000390887 106 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 RNA5SP105-201ENST00000391123 113 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.32□□□□□ -1.88
SCN4AP35499 AC118282.1-201ENST00000506408 765 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 AC119751.1-201ENST00000513357 765 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SCN4AP35499 RPL7P20-201ENST00000520308 745 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 HIGD1AP10-201ENST00000527837 282 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 AC007954.1-201ENST00000554198 494 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 OR4H12P-201ENST00000556269 907 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC3.32□□□□□ -1.88
SCN4AP35499 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.32□□□□□ -1.88
SCN4AP35499 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SCN4AP35499 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.32□□□□□ -1.88
SCN4AP35499 AC107027.3-201ENST00000565095 3473 ntBASIC3.32□□□□□ -1.88
SCN4AP35499 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.32□□□□□ -1.88
SCN4AP35499 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
SCN4AP35499 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SCN4AP35499 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.31□□□□□ -1.88
SCN4AP35499 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
SCN4AP35499 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.31□□□□□ -1.88
SCN4AP35499 AC240504.1-201ENST00000395709 845 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SCN4AP35499 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 AL049610.1-201ENST00000423374 372 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.31□□□□□ -1.88
SCN4AP35499 AL590623.1-201ENST00000427864 105 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 HMGN2P3-201ENST00000433603 273 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 HMGN2P5-201ENST00000436882 273 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.31□□□□□ -1.88
SCN4AP35499 AC090525.1-201ENST00000479116 478 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 OR9N1P-201ENST00000491296 333 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC3.31□□□□□ -1.88
SCN4AP35499 POU5F1P7-201ENST00000508759 541 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.31□□□□□ -1.88
SCN4AP35499 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC3.31□□□□□ -1.88
SCN4AP35499 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.31□□□□□ -1.88
SCN4AP35499 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.31□□□□□ -1.88
SCN4AP35499 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.31□□□□□ -1.88
SCN4AP35499 MTATP6P25-201ENST00000574491 261 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.31□□□□□ -1.88
SCN4AP35499 AC007620.3-201ENST00000608131 497 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.31□□□□□ -1.88
SCN4AP35499 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.31□□□□□ -1.88
SCN4AP35499 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
SCN4AP35499 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SCN4AP35499 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SCN4AP35499 AC004972.1-201ENST00000623934 2209 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SCN4AP35499 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
SCN4AP35499 AL133412.1-201ENST00000380194 2992 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.31□□□□□ -1.88
SCN4AP35499 AC090229.1-201ENST00000590983 1609 ntBASIC3.31□□□□□ -1.88
SCN4AP35499 SNORA62.2-201ENST00000364672 152 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 SNORA46-201ENST00000384762 135 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 SNORA3.2-201ENST00000408221 125 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 AL135786.1-201ENST00000415892 214 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC3.3□□□□□ -1.88
SCN4AP35499 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.3□□□□□ -1.88
SCN4AP35499 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.3□□□□□ -1.88
SCN4AP35499 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.3□□□□□ -1.88
SCN4AP35499 AC008565.1-201ENST00000509046 885 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.3□□□□□ -1.88
SCN4AP35499 TRAV37-201ENST00000553906 342 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC3.3□□□□□ -1.88
SCN4AP35499 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.3□□□□□ -1.88
SCN4AP35499 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC3.3□□□□□ -1.88
SCN4AP35499 AL118508.4-201ENST00000624142 1176 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
SCN4AP35499 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
SCN4AP35499 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
SCN4AP35499 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
SCN4AP35499 SNORD6-201ENST00000365444 73 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 AC083799.1-201ENST00000366451 910 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 RPL5P19-201ENST00000404228 893 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 RNA5SP247-201ENST00000411181 105 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 OR2AS1P-201ENST00000427827 319 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 SNRPGP5-201ENST00000456003 220 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.3□□□□□ -1.88
SCN4AP35499 AC005921.1-201ENST00000510589 286 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SCN4AP35499 RPS27AP18-201ENST00000515536 459 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 RNU6-319P-201ENST00000516025 108 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SCN4AP35499 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.3□□□□□ -1.88
SCN4AP35499 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.3□□□□□ -1.88
SCN4AP35499 AL442163.2-201ENST00000553912 710 ntBASIC3.3□□□□□ -1.88
SCN4AP35499 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.3□□□□□ -1.88
SCN4AP35499 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
SCN4AP35499 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms