Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 NXPH1-205ENST00000602349 1953 ntBASIC5.42□□□□□ -1.54
COL8A1P27658 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC5.42□□□□□ -1.54
COL8A1P27658 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL8A1P27658 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 HSPA8P1-201ENST00000425843 1833 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL8A1P27658 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL8A1P27658 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL8A1P27658 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC5.41□□□□□ -1.54
COL8A1P27658 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL8A1P27658 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL8A1P27658 MIR375-201ENST00000362103 64 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 RNU6-858P-201ENST00000362436 107 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 SNORD81.1-201ENST00000363064 77 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 RNY3P11-201ENST00000364153 102 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 SNORA24.1-201ENST00000384401 135 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.41□□□□□ -1.54
COL8A1P27658 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AL590762.4-201ENST00000425885 253 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 UBE2V1P13-201ENST00000436983 439 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.41□□□□□ -1.54
COL8A1P27658 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 AL031274.1-201ENST00000450334 232 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AC006967.1-201ENST00000467608 589 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC5.41□□□□□ -1.54
COL8A1P27658 RN7SL184P-201ENST00000488308 297 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 RN7SL808P-201ENST00000496066 299 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AC068305.1-201ENST00000497406 726 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AC020893.1-201ENST00000502452 580 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 SNORA72.7-201ENST00000516349 94 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 Y_RNA.710-201ENST00000516975 110 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 MTND5P41-201ENST00000517498 206 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AC012339.2-201ENST00000523996 453 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.41□□□□□ -1.54
COL8A1P27658 AC091078.2-201ENST00000557145 559 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AC109446.1-201ENST00000566172 220 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AC106785.4-201ENST00000569492 412 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 AC008162.1-201ENST00000604718 254 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AC072026.1-201ENST00000605023 201 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AL670379.4-201ENST00000605279 254 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 AC034229.6-201ENST00000623704 224 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 AP000550.3-201ENST00000637734 379 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL8A1P27658 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL8A1P27658 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 AL136531.3-201ENST00000624378 3658 ntBASIC5.41□□□□□ -1.54
COL8A1P27658 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL8A1P27658 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC5.41□□□□□ -1.54
COL8A1P27658 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
COL8A1P27658 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.4□□□□□ -1.54
COL8A1P27658 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
COL8A1P27658 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
COL8A1P27658 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.54
COL8A1P27658 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.4□□□□□ -1.54
COL8A1P27658 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL8A1P27658 RNU5B-2P-201ENST00000363036 113 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 RNU6-1078P-201ENST00000364522 103 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 SNORA23-201ENST00000365128 182 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
COL8A1P27658 MIR19A-201ENST00000384878 82 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 MIR541-201ENST00000401360 84 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 AC008280.1-201ENST00000418851 412 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.4□□□□□ -1.54
COL8A1P27658 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.4□□□□□ -1.54
COL8A1P27658 MRPS21P3-201ENST00000436696 262 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 FTLP8-201ENST00000446770 267 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.4□□□□□ -1.54
COL8A1P27658 CEACAMP6-201ENST00000452007 574 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC5.4□□□□□ -1.54
COL8A1P27658 RPL23AP31-201ENST00000456160 467 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 RNU7-167P-201ENST00000459160 62 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 AC108161.1-201ENST00000461060 402 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 RN7SL727P-201ENST00000482164 296 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 AC006499.3-201ENST00000506077 748 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms