Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LSM1P2-201ENST00000604911 322 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC126118.1-201ENST00000607744 628 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC007684.1-201ENST00000609671 477 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 TUG1_1.1-201ENST00000610654 145 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 MIR4727-201ENST00000622232 55 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AL732618.1-201ENST00000623251 301 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 AC243312.2-201ENST00000623340 601 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 SEPT14P19-203ENST00000633205 211 ntBASIC4.8□□□□□ -1.64
COL3A1P02461 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL3A1P02461 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL3A1P02461 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL3A1P02461 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
COL3A1P02461 ZNF849P-201ENST00000594711 1566 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC097634.1-201ENST00000604491 2467 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL3A1P02461 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL3A1P02461 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL3A1P02461 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL3A1P02461 RNU6-1005P-201ENST00000384519 107 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 SNORA26.8-201ENST00000391306 124 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 DEFB108C-201ENST00000400154 252 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 HMGN1P14-201ENST00000412459 517 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 BTF3P8-201ENST00000414577 526 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 RPS7P9-201ENST00000414704 586 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 CDK8P2-201ENST00000415020 547 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 Z75741.2-201ENST00000417272 1167 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC007563.3-201ENST00000433233 371 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 MTCYBP42-201ENST00000444653 1130 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 HMGB1P48-201ENST00000446155 598 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 AC084357.1-201ENST00000473404 255 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.79□□□□□ -1.64
COL3A1P02461 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 SUMO1P1-201ENST00000497904 306 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC021087.2-201ENST00000504656 1203 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL3A1P02461 PRDX4P1-201ENST00000507189 574 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 CBX3P3-201ENST00000508108 532 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC116347.2-201ENST00000514912 523 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 RN7SKP83-201ENST00000516512 178 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.79□□□□□ -1.64
COL3A1P02461 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.79□□□□□ -1.64
COL3A1P02461 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 AC011611.5-201ENST00000552477 578 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.79□□□□□ -1.64
COL3A1P02461 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.79□□□□□ -1.64
COL3A1P02461 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
COL3A1P02461 AP003117.2-201ENST00000606010 545 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 U3.45-201ENST00000607547 219 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AC008443.7-201ENST00000622195 246 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.79□□□□□ -1.64
COL3A1P02461 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL3A1P02461 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.79□□□□□ -1.64
COL3A1P02461 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL3A1P02461 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL3A1P02461 AC087359.1-201ENST00000508335 1740 ntBASIC4.79□□□□□ -1.64
COL3A1P02461 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL3A1P02461 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL3A1P02461 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL3A1P02461 MFSD8-233ENST00000641482 4860 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL3A1P02461 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL3A1P02461 Y_RNA.41-201ENST00000362646 102 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 RNU6-1119P-201ENST00000384349 108 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 PTMAP5-201ENST00000393073 333 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 U3.39-201ENST00000408569 239 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 RN7SKP177-201ENST00000410567 355 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 CCDC58P2-201ENST00000417131 366 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AC114814.2-201ENST00000419195 485 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.78□□□□□ -1.64
COL3A1P02461 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.78□□□□□ -1.64
COL3A1P02461 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.78□□□□□ -1.64
COL3A1P02461 MTCO1P48-201ENST00000448024 1096 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.78□□□□□ -1.64
COL3A1P02461 RPS4XP2-201ENST00000458402 793 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 SNORD105B-201ENST00000458770 79 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 HMGN1P11-201ENST00000508668 303 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 RN7SKP5-201ENST00000517045 272 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.78□□□□□ -1.64
COL3A1P02461 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC4.78□□□□□ -1.64
COL3A1P02461 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.78□□□□□ -1.64
COL3A1P02461 AC118273.2-201ENST00000532092 465 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AC016957.1-201ENST00000534895 309 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.78□□□□□ -1.64
COL3A1P02461 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL3A1P02461 AC005476.1-201ENST00000554427 397 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AC009101.1-201ENST00000568135 242 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AC078795.3-201ENST00000602913 472 ntBASIC4.78□□□□□ -1.64
COL3A1P02461 AC004223.4-201ENST00000612426 332 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms