Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SLC35E1P1-201ENST00000419313 864 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC062016.2-201ENST00000420950 676 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AP001324.1-201ENST00000428553 399 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 NPM1P34-201ENST00000428821 893 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC133104.1-201ENST00000429100 218 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 RPL31P35-201ENST00000431058 377 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC063943.1-201ENST00000465434 453 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC083798.1-201ENST00000472671 131 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC026801.2-201ENST00000515352 425 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 Y_RNA.672-201ENST00000516289 104 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 RNU6-445P-201ENST00000516949 107 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AP001189.2-201ENST00000527320 189 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 CTHRC1P1-201ENST00000605383 469 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AL080274.1-201ENST00000605565 220 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC103710.3-201ENST00000608157 948 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 DISC2.1-201ENST00000612827 205 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 HMGB1P24-202ENST00000615653 685 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AP006248.2-201ENST00000623309 592 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC040168.1-201ENST00000623594 991 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 U6.107-201ENST00000637108 79 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 MIR4302-201ENST00000638058 60 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 MKKS-204ENST00000639674 192 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC011493.1-201ENST00000596753 1632 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC093775.1-201ENST00000624154 1868 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RNU4-44P-201ENST00000363050 141 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RN7SKP162-201ENST00000363605 345 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RNU6-185P-201ENST00000384421 107 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RNU6-510P-201ENST00000391239 108 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RPL32P23-201ENST00000397237 405 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RN7SKP206-201ENST00000410823 293 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 TMBIM7P-201ENST00000418074 855 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC083875.1-201ENST00000419509 405 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AL645937.1-202ENST00000421799 937 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 DPY19L1P2-201ENST00000426647 915 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 COX6CP13-201ENST00000428703 226 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC007559.1-201ENST00000428736 355 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 MTCYBP9-201ENST00000431021 303 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC109583.1-201ENST00000432156 268 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RPL36AP53-201ENST00000432891 316 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 IFNA20P-201ENST00000436840 528 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 SKP1P1-201ENST00000438081 489 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AP000936.3-201ENST00000438127 255 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 HMGB1P18-201ENST00000438801 619 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AL353093.1-201ENST00000441292 436 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AL606490.1-201ENST00000452266 765 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC091180.1-201ENST00000462104 372 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RPS21P4-201ENST00000487122 248 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RN7SL283P-201ENST00000489055 303 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 HMGB1P28-201ENST00000507778 552 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC048346.1-201ENST00000510247 144 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 ENPP7P9-201ENST00000514456 627 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC024940.3-201ENST00000538551 316 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 SCOCP1-201ENST00000554676 349 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AL117187.1-201ENST00000555482 181 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC138915.2-201ENST00000569776 97 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC010653.1-201ENST00000571108 881 ntBASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms