Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 USP9YP27-201ENST00000418455 438 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 RPS15AP12-201ENST00000419498 388 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 ELOCP4-201ENST00000420090 333 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 ELOCP18-201ENST00000434209 337 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC093156.1-201ENST00000440382 670 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AL589765.3-201ENST00000446084 462 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 RPL23AP20-201ENST00000447965 421 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 SNORD121B-201ENST00000458838 81 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 snoU109.4-201ENST00000458953 143 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC055855.1-201ENST00000489563 579 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 COX6B1P5-201ENST00000509843 249 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC040958.1-201ENST00000561102 201 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC007448.1-201ENST00000582714 234 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 KC877982.1-201ENST00000602313 470 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC115621.1-201ENST00000604653 858 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 EIF3FP1-201ENST00000613970 806 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AL049794.2-201ENST00000616301 365 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 U73479.1-201ENST00000618062 168 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC009704.2-201ENST00000618739 483 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC139792.3-201ENST00000623525 224 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC099654.14-201ENST00000638599 341 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AL592437.2-201ENST00000421655 2434 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AC004817.4-201ENST00000602396 3625 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC009951.1-201ENST00000623674 2614 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AP001642.1-201ENST00000624727 2117 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 SNORA66-201ENST00000384792 133 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 RNU6-821P-201ENST00000390995 107 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 RPL12P9-201ENST00000412942 488 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 COX5BP7-201ENST00000414780 274 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AL354714.3-201ENST00000447284 493 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 NFU1P2-201ENST00000448700 469 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 RPL38P1-201ENST00000460914 211 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC053481.1-201ENST00000467217 306 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 RPL32P9-201ENST00000487963 407 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 Y_RNA.693-201ENST00000516641 110 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC107934.1-201ENST00000522215 217 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 OR8L1P-201ENST00000534005 955 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC025678.1-201ENST00000567861 338 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 PRPF19P1-201ENST00000584766 898 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 UBE2L4-201ENST00000587688 464 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC068790.5-201ENST00000602741 355 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC105254.2-201ENST00000603636 436 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC004067.1-201ENST00000608733 700 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 OR6R2P-201ENST00000609216 300 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AC002553.4-201ENST00000616896 331 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AL158801.5-201ENST00000623123 465 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AP000843.1-201ENST00000624880 701 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AL159972.1-201ENST00000625150 448 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.02□□□□□ -1.61
TRIM39Q9HCM9 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms