Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC107016.2-201ENST00000547968 190 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC023043.3-201ENST00000593113 385 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AL020997.2-201ENST00000602607 184 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC006023.2-201ENST00000609916 167 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AL355493.4-201ENST00000618530 292 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC026422.1-201ENST00000623961 452 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 FAM157B-203ENST00000639350 358 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC092447.7-201ENST00000422212 1621 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC42Q96M95 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC42Q96M95 MIR449B-201ENST00000384995 97 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC42Q96M95 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC42Q96M95 MUPP-201ENST00000438111 566 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 ARL5AP3-201ENST00000439327 386 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC42Q96M95 AL590399.6-201ENST00000446396 307 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 PRDX3P3-201ENST00000447765 522 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 NF1P3-201ENST00000457709 450 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC42Q96M95 WBP1LP4-201ENST00000505043 344 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 AC008885.1-201ENST00000514930 301 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 RNA5SP76-201ENST00000516277 87 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 AC025857.1-201ENST00000525252 377 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 AC239860.2-201ENST00000525886 270 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC42Q96M95 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC42Q96M95 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC42Q96M95 HMGB1P51-201ENST00000605166 638 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC42Q96M95 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 AC034229.5-201ENST00000624258 185 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 AC022031.1-201ENST00000585985 2593 ntBASIC3.09□□□□□ -1.91
CCDC42Q96M95 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.09□□□□□ -1.92
CCDC42Q96M95 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
CCDC42Q96M95 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC42Q96M95 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC42Q96M95 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 AC092435.3-201ENST00000565538 3654 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC42Q96M95 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC42Q96M95 EIF5P1-201ENST00000400019 1231 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 RNA5SP120-201ENST00000410900 112 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 AC234782.4-201ENST00000417646 1048 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 AL591503.2-201ENST00000442314 1005 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 RPL7P52-201ENST00000449200 742 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 GSTA11P-201ENST00000452866 669 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 RPL32P34-201ENST00000486380 400 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 SNORA9.3-201ENST00000516383 129 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 AP002812.4-201ENST00000532139 286 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 HPRT1P3-201ENST00000539521 576 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 MTCO3P24-201ENST00000572729 782 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 AP004372.1-201ENST00000604842 844 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 AC012557.1-201ENST00000607115 611 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 AC090617.7-201ENST00000623952 126 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 MIR6733-201ENST00000635723 61 ntBASIC3.08□□□□□ -1.92
CCDC42Q96M95 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC42Q96M95 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC42Q96M95 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC42Q96M95 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC42Q96M95 GSTA8P-201ENST00000404253 637 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 NUP35P2-201ENST00000416748 943 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 RPS15AP40-201ENST00000419621 391 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 DUTP6-201ENST00000425573 462 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 AL050321.1-201ENST00000432363 400 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC42Q96M95 BX276092.4-201ENST00000452056 248 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 RPL21P104-201ENST00000464143 478 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 RN7SL601P-201ENST00000471221 293 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 AC020898.1-201ENST00000474167 787 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC42Q96M95 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC42Q96M95 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 MTND2P26-201ENST00000528255 1029 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 MTCYBP41-201ENST00000528913 1123 ntBASIC3.07□□□□□ -1.92
CCDC42Q96M95 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC42Q96M95 MIR5004-201ENST00000579078 107 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms