Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
NPAS3Q8IXF0 KPNA2P2-201ENST00000419546 1489 ntBASIC6.13□□□□□ -1.43
NPAS3Q8IXF0 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NPAS3Q8IXF0 SAMMSON-226ENST00000642089 1582 ntBASIC6.13□□□□□ -1.43
NPAS3Q8IXF0 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
NPAS3Q8IXF0 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
NPAS3Q8IXF0 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
NPAS3Q8IXF0 AC016583.1-201ENST00000624221 2431 ntBASIC6.13□□□□□ -1.43
NPAS3Q8IXF0 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 MIR411-201ENST00000362239 96 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 Y_RNA.43-201ENST00000362670 111 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 Y_RNA.84-201ENST00000363011 104 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RN7SKP124-201ENST00000364730 341 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RNU6-215P-201ENST00000365169 102 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 Y_RNA.352-201ENST00000365439 102 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RNU6-641P-201ENST00000384006 107 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 SNORD58.1-201ENST00000391313 66 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RNU6-1203P-201ENST00000410703 110 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 Z99755.1-201ENST00000414048 380 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RPS23P9-201ENST00000448848 438 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 TPT1P12-201ENST00000448968 492 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 GAS5-223ENST00000452197 483 ntTSL 3 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 SDC4P-201ENST00000453285 601 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 PSMC1P13-201ENST00000458195 985 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RN7SL352P-201ENST00000466002 277 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RPS15AP17-201ENST00000470598 390 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC109925.1-201ENST00000478069 331 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AL049830.2-201ENST00000480072 201 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RPL21P93-201ENST00000480465 489 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 RN7SL184P-201ENST00000488308 297 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC116562.3-201ENST00000506136 177 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC008716.1-201ENST00000511084 513 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC068587.5-201ENST00000528506 175 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 HMGB1P42-201ENST00000532126 553 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC145423.1-201ENST00000605712 336 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC211433.2-201ENST00000608433 387 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC104465.1-201ENST00000611365 139 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC011504.1-201ENST00000623331 4103 ntBASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
NPAS3Q8IXF0 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AOX3P-204ENST00000491025 2107 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 RNU6-82P-201ENST00000363970 107 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 SNORA58B-201ENST00000364259 136 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 RNA5SP211-201ENST00000365516 117 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 RNU6-1168P-201ENST00000390831 104 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 HMGB1P17-201ENST00000403495 628 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 RN7SKP51-201ENST00000410781 304 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AC116036.1-201ENST00000412199 367 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 RPL31P45-201ENST00000419532 356 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 RPL21P133-201ENST00000443666 476 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 HMGB3P21-201ENST00000452483 547 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AC104849.1-201ENST00000462623 405 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 RPS24P16-201ENST00000497294 392 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AL035404.1-201ENST00000497982 568 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AKIRIN2P1-201ENST00000505898 352 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 RNU6-307P-201ENST00000516743 106 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 DEFB108E-201ENST00000524692 240 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AL049872.1-201ENST00000556323 322 ntBASIC6.11□□□□□ -1.43
NPAS3Q8IXF0 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms