Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU4-26P-201ENST00000410270 107 ntBASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 AL391156.1-201ENST00000554965 554 ntBASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 AC025034.2-201ENST00000623264 286 ntBASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 MIR26A1-201ENST00000362205 77 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 BTF3P7-201ENST00000407097 488 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC013268.2-201ENST00000420753 337 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 RPL21P71-201ENST00000465598 459 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC021205.1-201ENST00000468797 348 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 RN7SL330P-201ENST00000469709 307 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC019227.1-201ENST00000526902 510 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 UBTFL10-201ENST00000528532 562 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 MIR3186-201ENST00000577404 85 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 MIR1289-2-201ENST00000408360 111 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC004987.3-201ENST00000413879 771 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AL137014.1-201ENST00000420490 1226 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 CACYBPP2-201ENST00000453625 678 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 RNU6-943P-201ENST00000516960 98 ntBASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC88AQ3V6T2 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 PNPT1P2-201ENST00000456768 2050 ntBASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 RPL29P29-201ENST00000448725 423 ntBASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 SNRPGP5-201ENST00000456003 220 ntBASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 AC078817.1-201ENST00000492623 435 ntBASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 AC093278.1-201ENST00000494700 600 ntBASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 RNA5SP282-201ENST00000516355 108 ntBASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CCDC88AQ3V6T2 AL353743.4-201ENST00000422653 1547 ntBASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 NCSTNP1-201ENST00000406229 144 ntBASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 RNA5SP247-201ENST00000411181 105 ntBASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 AL049610.1-201ENST00000423374 372 ntBASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 OR2B8P-201ENST00000432841 938 ntBASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 AP004217.1-201ENST00000480579 346 ntBASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC88AQ3V6T2 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 MTND4LP12-201ENST00000448237 295 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 POU5F1P7-201ENST00000508759 541 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 OR5AK3P-201ENST00000527486 1297 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AC025423.2-201ENST00000537570 439 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 TRAV37-201ENST00000553906 342 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 XIAPP3-201ENST00000312918 795 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AL591806.2-201ENST00000433122 173 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 snoU13.23-201ENST00000458863 104 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 RPL21P41-201ENST00000459863 264 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AP000893.1-201ENST00000474462 794 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AC093331.1-201ENST00000521474 169 ntBASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC88AQ3V6T2 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 AL360182.1-201ENST00000397433 468 ntBASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 CYCSP45-201ENST00000402289 315 ntBASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 AL513043.1-201ENST00000439124 535 ntBASIC3.29□□□□□ -1.88
CCDC88AQ3V6T2 AC068305.1-201ENST00000497406 726 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms