Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AP000873.5-201ENST00000533906 236 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 AC092851.1-201ENST00000535964 478 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 AC008083.2-201ENST00000546707 476 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 AL049870.4-201ENST00000555741 486 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 MTND4LP24-201ENST00000572277 291 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.48□□□□□ -1.85
BRCA1P38398 AC010680.4-201ENST00000605334 543 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 MIR7973-1-201ENST00000614683 76 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 AC009032.1-201ENST00000617574 431 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 AC073476.4-201ENST00000628409 72 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.48□□□□□ -1.85
BRCA1P38398 AC093311.1-201ENST00000506586 2021 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
BRCA1P38398 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.48□□□□□ -1.85
BRCA1P38398 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.48□□□□□ -1.85
BRCA1P38398 FAM133CP-201ENST00000332869 704 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
BRCA1P38398 AL513477.1-202ENST00000417061 214 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 GLRXP1-201ENST00000423261 334 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AL355994.1-201ENST00000424379 260 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AC245517.2-201ENST00000442890 346 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 PRELID3BP7-201ENST00000503606 469 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AC111193.1-201ENST00000504097 155 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.47□□□□□ -1.85
BRCA1P38398 MTATP6P22-201ENST00000507369 598 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
BRCA1P38398 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.47□□□□□ -1.85
BRCA1P38398 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.47□□□□□ -1.85
BRCA1P38398 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.47□□□□□ -1.85
BRCA1P38398 AC008507.1-201ENST00000587506 734 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AC022387.2-201ENST00000604050 448 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 NEAT1-202ENST00000501122 22743 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AC008725.1-201ENST00000605123 2263 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
BRCA1P38398 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
BRCA1P38398 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.47□□□□□ -1.85
BRCA1P38398 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.47□□□□□ -1.85
BRCA1P38398 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
BRCA1P38398 AC108157.1-201ENST00000510511 539 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.47□□□□□ -1.85
BRCA1P38398 AP002770.2-201ENST00000543613 532 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AC007954.1-201ENST00000554198 494 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.47□□□□□ -1.85
BRCA1P38398 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.47□□□□□ -1.85
BRCA1P38398 U7.8-201ENST00000619968 63 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 AC096656.1-201ENST00000623826 1364 ntBASIC3.47□□□□□ -1.85
BRCA1P38398 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
BRCA1P38398 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.46□□□□□ -1.85
BRCA1P38398 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
BRCA1P38398 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
BRCA1P38398 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
BRCA1P38398 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.46□□□□□ -1.86
BRCA1P38398 MTCO3P20-201ENST00000454926 688 ntBASIC3.46□□□□□ -1.86
BRCA1P38398 snoU13.23-201ENST00000458863 104 ntBASIC3.46□□□□□ -1.86
BRCA1P38398 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.46□□□□□ -1.86
BRCA1P38398 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
BRCA1P38398 RNA5SP148-201ENST00000516527 94 ntBASIC3.46□□□□□ -1.86
BRCA1P38398 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.46□□□□□ -1.86
BRCA1P38398 VTA1P2-201ENST00000520205 911 ntBASIC3.46□□□□□ -1.86
BRCA1P38398 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.46□□□□□ -1.86
BRCA1P38398 AC068446.3-201ENST00000555285 382 ntBASIC3.46□□□□□ -1.86
BRCA1P38398 AC009268.1-201ENST00000561352 1203 ntBASIC3.46□□□□□ -1.86
BRCA1P38398 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.46□□□□□ -1.86
BRCA1P38398 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.46□□□□□ -1.86
BRCA1P38398 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.46□□□□□ -1.86
BRCA1P38398 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
BRCA1P38398 AC114546.3-201ENST00000623582 1734 ntBASIC3.46□□□□□ -1.86
BRCA1P38398 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.45□□□□□ -1.86
BRCA1P38398 MIR7-1-201ENST00000384871 110 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 ATP5F1P6-201ENST00000402768 767 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 RNA5SP425-201ENST00000410336 112 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 RPL30P2-201ENST00000414021 291 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 MED6P1-201ENST00000439659 713 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 IFNA11P-201ENST00000446352 526 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.45□□□□□ -1.86
BRCA1P38398 RNA5SP282-201ENST00000516355 108 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 MIR2276-201ENST00000516886 89 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.45□□□□□ -1.86
BRCA1P38398 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.45□□□□□ -1.86
BRCA1P38398 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.45□□□□□ -1.86
BRCA1P38398 DNAJC19P3-201ENST00000594491 331 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AC025754.2-201ENST00000606491 432 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AC008121.2-201ENST00000614647 523 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.45□□□□□ -1.86
BRCA1P38398 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
BRCA1P38398 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
BRCA1P38398 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
BRCA1P38398 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
BRCA1P38398 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
BRCA1P38398 AC022031.1-201ENST00000585985 2593 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 MIR512-1-201ENST00000384913 84 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 MIR320B1-201ENST00000390209 79 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 AL356057.3-201ENST00000402607 340 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
BRCA1P38398 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.45□□□□□ -1.86
BRCA1P38398 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.45□□□□□ -1.86
BRCA1P38398 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.45□□□□□ -1.86
BRCA1P38398 AP001025.2-201ENST00000490908 477 ntBASIC3.45□□□□□ -1.86
BRCA1P38398 RPS29P21-201ENST00000496272 170 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 137.9 ms