Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RFX1P22670 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RFX1P22670 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.26□□□□□ -1.41
RFX1P22670 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 MTCO1P9-201ENST00000505577 1534 ntBASIC6.26□□□□□ -1.41
RFX1P22670 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.26□□□□□ -1.41
RFX1P22670 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
RFX1P22670 RNA5SP443-201ENST00000363083 132 ntBASIC6.26□□□□□ -1.41
RFX1P22670 RNU6-1284P-201ENST00000363701 100 ntBASIC6.26□□□□□ -1.41
RFX1P22670 Y_RNA.315-201ENST00000365117 102 ntBASIC6.26□□□□□ -1.41
RFX1P22670 Y_RNA.373-201ENST00000365600 103 ntBASIC6.26□□□□□ -1.41
RFX1P22670 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 AL583835.1-201ENST00000399570 407 ntBASIC6.26□□□□□ -1.41
RFX1P22670 RNU2-36P-201ENST00000410361 191 ntBASIC6.26□□□□□ -1.41
RFX1P22670 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 RPS20P1-201ENST00000434853 354 ntBASIC6.26□□□□□ -1.41
RFX1P22670 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC6.26□□□□□ -1.41
RFX1P22670 MRPL48P1-201ENST00000445390 636 ntBASIC6.26□□□□□ -1.41
RFX1P22670 AL118520.1-201ENST00000450770 291 ntBASIC6.26□□□□□ -1.41
RFX1P22670 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC6.26□□□□□ -1.41
RFX1P22670 AL133445.1-201ENST00000467051 452 ntBASIC6.26□□□□□ -1.41
RFX1P22670 RN7SL799P-201ENST00000475891 298 ntBASIC6.26□□□□□ -1.41
RFX1P22670 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC6.26□□□□□ -1.41
RFX1P22670 AC074255.1-201ENST00000511259 501 ntBASIC6.26□□□□□ -1.41
RFX1P22670 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC6.26□□□□□ -1.41
RFX1P22670 AC103783.1-201ENST00000520506 373 ntBASIC6.26□□□□□ -1.41
RFX1P22670 DEFB109D-201ENST00000529497 240 ntBASIC6.26□□□□□ -1.41
RFX1P22670 AP003385.6-201ENST00000531603 374 ntBASIC6.26□□□□□ -1.41
RFX1P22670 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC6.26□□□□□ -1.41
RFX1P22670 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.26□□□□□ -1.41
RFX1P22670 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.26□□□□□ -1.41
RFX1P22670 MIR4505-201ENST00000582238 73 ntBASIC6.26□□□□□ -1.41
RFX1P22670 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 AC006254.3-201ENST00000603353 884 ntBASIC6.26□□□□□ -1.41
RFX1P22670 AC012443.1-201ENST00000605605 231 ntBASIC6.26□□□□□ -1.41
RFX1P22670 AL162730.1-201ENST00000605734 292 ntBASIC6.26□□□□□ -1.41
RFX1P22670 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.26□□□□□ -1.41
RFX1P22670 U6.114-201ENST00000636407 96 ntBASIC6.26□□□□□ -1.41
RFX1P22670 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 AP004289.2-201ENST00000444413 1457 ntBASIC6.26□□□□□ -1.41
RFX1P22670 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
RFX1P22670 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
RFX1P22670 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.25□□□□□ -1.41
RFX1P22670 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.25□□□□□ -1.41
RFX1P22670 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.25□□□□□ -1.41
RFX1P22670 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
RFX1P22670 SNORA58B-201ENST00000364259 136 ntBASIC6.25□□□□□ -1.41
RFX1P22670 PARD3-204ENST00000374768 799 ntTSL 3 BASIC6.25□□□□□ -1.41
RFX1P22670 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 RNU1-136P-201ENST00000384181 164 ntBASIC6.25□□□□□ -1.41
RFX1P22670 RNU11-4P-201ENST00000391149 133 ntBASIC6.25□□□□□ -1.41
RFX1P22670 AL359634.1-202ENST00000404721 284 ntBASIC6.25□□□□□ -1.41
RFX1P22670 SPTLC1P2-201ENST00000407089 121 ntBASIC6.25□□□□□ -1.41
RFX1P22670 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC6.25□□□□□ -1.41
RFX1P22670 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC6.25□□□□□ -1.41
RFX1P22670 RPS27AP12-201ENST00000429552 465 ntBASIC6.25□□□□□ -1.41
RFX1P22670 AC092162.1-201ENST00000432828 434 ntBASIC6.25□□□□□ -1.41
RFX1P22670 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC6.25□□□□□ -1.41
RFX1P22670 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.25□□□□□ -1.41
RFX1P22670 NIPA2P5-201ENST00000452282 464 ntBASIC6.25□□□□□ -1.41
RFX1P22670 SNRPFP3-201ENST00000457792 225 ntBASIC6.25□□□□□ -1.41
RFX1P22670 SNORD19B-201ENST00000459623 84 ntBASIC6.25□□□□□ -1.41
RFX1P22670 RPL37P6-202ENST00000464216 403 ntBASIC6.25□□□□□ -1.41
RFX1P22670 OR2AO1P-201ENST00000476497 403 ntBASIC6.25□□□□□ -1.41
RFX1P22670 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC6.25□□□□□ -1.41
RFX1P22670 RPL7P20-201ENST00000520308 745 ntBASIC6.25□□□□□ -1.41
RFX1P22670 AP000648.1-201ENST00000529682 397 ntBASIC6.25□□□□□ -1.41
RFX1P22670 OR10G5P-201ENST00000532733 358 ntBASIC6.25□□□□□ -1.41
RFX1P22670 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.25□□□□□ -1.41
RFX1P22670 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC6.25□□□□□ -1.41
RFX1P22670 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC6.25□□□□□ -1.41
RFX1P22670 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
RFX1P22670 AL031176.1-201ENST00000604554 466 ntBASIC6.25□□□□□ -1.41
RFX1P22670 AP001836.1-201ENST00000604675 523 ntBASIC6.25□□□□□ -1.41
RFX1P22670 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.25□□□□□ -1.41
RFX1P22670 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC6.25□□□□□ -1.41
RFX1P22670 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC6.25□□□□□ -1.41
RFX1P22670 AL133216.2-202ENST00000634512 349 ntBASIC6.25□□□□□ -1.41
RFX1P22670 MTND4P14-201ENST00000435799 1354 ntBASIC6.25□□□□□ -1.41
RFX1P22670 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC6.25□□□□□ -1.41
RFX1P22670 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RFX1P22670 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms