Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 AC093503.3-201ENST00000624917 2352 ntBASIC17.16■□□□□ 0.34
VSX1Q9NZR4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 PRKY-204ENST00000533551 1019 ntBASIC17.16■□□□□ 0.34
VSX1Q9NZR4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 AC008403.3-201ENST00000598924 454 ntBASIC17.16■□□□□ 0.34
VSX1Q9NZR4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VSX1Q9NZR4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.15■□□□□ 0.34
VSX1Q9NZR4 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
VSX1Q9NZR4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
VSX1Q9NZR4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.14■□□□□ 0.34
VSX1Q9NZR4 AL049812.1-201ENST00000432563 2267 ntBASIC17.14■□□□□ 0.33
VSX1Q9NZR4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
VSX1Q9NZR4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VSX1Q9NZR4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms