Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.15■□□□□ 0.82
CDX2Q99626 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDX2Q99626 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDX2Q99626 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CDX2Q99626 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.14■□□□□ 0.81
CDX2Q99626 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
CDX2Q99626 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.14■□□□□ 0.81
CDX2Q99626 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
CDX2Q99626 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.14■□□□□ 0.81
CDX2Q99626 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.14■□□□□ 0.81
CDX2Q99626 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.14■□□□□ 0.81
CDX2Q99626 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CDX2Q99626 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.14■□□□□ 0.81
CDX2Q99626 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX2Q99626 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX2Q99626 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX2Q99626 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CDX2Q99626 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDX2Q99626 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX2Q99626 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX2Q99626 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.13■□□□□ 0.81
CDX2Q99626 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CDX2Q99626 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX2Q99626 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.13■□□□□ 0.81
CDX2Q99626 AC005332.3-201ENST00000589904 676 ntBASIC20.13■□□□□ 0.81
CDX2Q99626 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CDX2Q99626 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CDX2Q99626 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.13■□□□□ 0.81
CDX2Q99626 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.12■□□□□ 0.81
CDX2Q99626 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.12■□□□□ 0.81
CDX2Q99626 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.12■□□□□ 0.81
CDX2Q99626 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CDX2Q99626 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 GPX1P2-201ENST00000429271 606 ntBASIC20.12■□□□□ 0.81
CDX2Q99626 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.12■□□□□ 0.81
CDX2Q99626 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.12■□□□□ 0.81
CDX2Q99626 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.12■□□□□ 0.81
CDX2Q99626 MIR7706-201ENST00000613747 67 ntBASIC20.12■□□□□ 0.81
CDX2Q99626 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.12■□□□□ 0.81
CDX2Q99626 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CDX2Q99626 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX2Q99626 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.11■□□□□ 0.81
CDX2Q99626 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDX2Q99626 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.11■□□□□ 0.81
CDX2Q99626 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDX2Q99626 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDX2Q99626 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.11■□□□□ 0.81
CDX2Q99626 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.11■□□□□ 0.81
CDX2Q99626 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.11■□□□□ 0.81
CDX2Q99626 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.11■□□□□ 0.81
CDX2Q99626 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.11■□□□□ 0.81
CDX2Q99626 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDX2Q99626 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDX2Q99626 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
CDX2Q99626 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDX2Q99626 NSUN5P1-202ENST00000421140 1535 ntBASIC20.11■□□□□ 0.81
CDX2Q99626 NSUN5P2-203ENST00000457352 1529 ntBASIC20.11■□□□□ 0.81
CDX2Q99626 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDX2Q99626 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.11■□□□□ 0.81
CDX2Q99626 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CDX2Q99626 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.1■□□□□ 0.81
CDX2Q99626 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.1■□□□□ 0.81
CDX2Q99626 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CDX2Q99626 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.1■□□□□ 0.81
CDX2Q99626 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.1■□□□□ 0.81
CDX2Q99626 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 AC004967.1-201ENST00000453589 447 ntBASIC20.1■□□□□ 0.81
CDX2Q99626 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms