Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 MIR662-201ENST00000384847 95 ntBASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 AL031284.1-201ENST00000419297 478 ntBASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 HLA-F-220ENST00000434407 884 ntBASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMC1BQ8NDV3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 AC093909.1-201ENST00000504731 1122 ntBASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 AF238378.1-201ENST00000526806 358 ntBASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 AC024243.1-201ENST00000609234 778 ntBASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 AC055717.3-201ENST00000622967 595 ntBASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMC1BQ8NDV3 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 NME1-207ENST00000480143 964 ntTSL 2 BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SMC1BQ8NDV3 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 C1orf229-201ENST00000623686 2258 ntBASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 FAM197Y8-203ENST00000450145 560 ntBASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 AC073648.2-201ENST00000510116 352 ntBASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 LINC00167-201ENST00000530583 1419 ntBASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 AC079602.3-201ENST00000623931 403 ntBASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
SMC1BQ8NDV3 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC22.77■■□□□ 1.24
SMC1BQ8NDV3 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC22.77■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms