Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 WIZP1-201ENST00000531444 2299 ntBASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 AC008694.1-202ENST00000636953 945 ntBASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF540Q8NDQ6 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 CD99P1-205ENST00000527459 561 ntBASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 AC243732.1-201ENST00000612648 864 ntBASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 AL050303.2-201ENST00000619798 666 ntBASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 AC133041.1-202ENST00000642053 222 ntBASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF540Q8NDQ6 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
ZNF540Q8NDQ6 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 AC007322.4-201ENST00000509611 723 ntBASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
ZNF540Q8NDQ6 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.75■□□□□ 0.43
ZNF540Q8NDQ6 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms