Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 LINC01465-201ENST00000408887 1940 ntBASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 BX276092.5-203ENST00000456199 560 ntBASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 TPSP2-201ENST00000561760 610 ntBASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 TBC1D3P2-202ENST00000577902 1649 ntBASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC88AQ3V6T2 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 AP002383.4-201ENST00000442518 975 ntBASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 AL121672.3-201ENST00000608644 468 ntBASIC23.56■■□□□ 1.36
CCDC88AQ3V6T2 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 AC093525.10-201ENST00000625130 1569 ntBASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 RASA4DP-201ENST00000460726 1199 ntBASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 AC092597.1-201ENST00000487352 616 ntBASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 AC104692.2-201ENST00000603054 253 ntBASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC88AQ3V6T2 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 FAAHP1-202ENST00000446499 1238 ntBASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC88AQ3V6T2 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC88AQ3V6T2 AC099778.1-201ENST00000568593 1911 ntBASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 FGF14-AS2-201ENST00000606448 1074 ntBASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC88AQ3V6T2 TCF3P1-201ENST00000423021 1937 ntBASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC88AQ3V6T2 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms