Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 KRT18P58-201ENST00000527480 1120 ntBASIC13.79□□□□□ -0.2
COL7A1Q02388 AC138894.3-201ENST00000603787 634 ntBASIC13.79□□□□□ -0.2
COL7A1Q02388 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC13.79□□□□□ -0.2
COL7A1Q02388 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 MOK-225ENST00000522867 1883 ntTSL 5 BASIC13.79□□□□□ -0.2
COL7A1Q02388 LSR-203ENST00000360798 1963 ntTSL 2 BASIC13.79□□□□□ -0.2
COL7A1Q02388 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
COL7A1Q02388 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL7A1Q02388 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
COL7A1Q02388 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
COL7A1Q02388 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 DRAXINP1-201ENST00000437611 948 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 NUS1P1-201ENST00000446295 882 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL7A1Q02388 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC13.78□□□□□ -0.2
COL7A1Q02388 AC092865.5-201ENST00000545435 363 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC13.78□□□□□ -0.2
COL7A1Q02388 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC13.78□□□□□ -0.2
COL7A1Q02388 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 AC007225.1-201ENST00000566331 1836 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 AC121338.2-201ENST00000622535 1744 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC13.78□□□□□ -0.2
COL7A1Q02388 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC13.78□□□□□ -0.2
COL7A1Q02388 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC13.78□□□□□ -0.2
COL7A1Q02388 MIR4674-201ENST00000582457 87 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 LINC02084-201ENST00000606069 1096 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC13.78□□□□□ -0.2
COL7A1Q02388 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.78□□□□□ -0.2
COL7A1Q02388 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC13.78□□□□□ -0.2
COL7A1Q02388 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL7A1Q02388 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL7A1Q02388 AL391422.3-201ENST00000603791 2761 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 AC243591.1-201ENST00000452967 1364 ntBASIC13.78□□□□□ -0.2
COL7A1Q02388 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL7A1Q02388 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC13.77□□□□□ -0.2
COL7A1Q02388 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL7A1Q02388 AL590627.1-203ENST00000421194 1026 ntBASIC13.77□□□□□ -0.2
COL7A1Q02388 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL7A1Q02388 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.77□□□□□ -0.2
COL7A1Q02388 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL7A1Q02388 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC13.77□□□□□ -0.2
COL7A1Q02388 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL7A1Q02388 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC13.77□□□□□ -0.2
COL7A1Q02388 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL7A1Q02388 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL7A1Q02388 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC13.77□□□□□ -0.2
COL7A1Q02388 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL7A1Q02388 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL7A1Q02388 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC13.77□□□□□ -0.21
COL7A1Q02388 AC026310.3-201ENST00000625186 2373 ntBASIC13.77□□□□□ -0.21
COL7A1Q02388 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL7A1Q02388 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC13.77□□□□□ -0.21
COL7A1Q02388 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL7A1Q02388 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL7A1Q02388 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
COL7A1Q02388 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.77□□□□□ -0.21
COL7A1Q02388 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC13.77□□□□□ -0.21
COL7A1Q02388 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL7A1Q02388 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC13.76□□□□□ -0.21
COL7A1Q02388 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 AC133561.1-201ENST00000568600 2415 ntBASIC13.76□□□□□ -0.21
COL7A1Q02388 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC13.76□□□□□ -0.21
COL7A1Q02388 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.76□□□□□ -0.21
COL7A1Q02388 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.76□□□□□ -0.21
COL7A1Q02388 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.76□□□□□ -0.21
COL7A1Q02388 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.76□□□□□ -0.21
COL7A1Q02388 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL7A1Q02388 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL7A1Q02388 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC13.76□□□□□ -0.21
COL7A1Q02388 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
COL7A1Q02388 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL7A1Q02388 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
COL7A1Q02388 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC13.76□□□□□ -0.21
COL7A1Q02388 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC13.76□□□□□ -0.21
COL7A1Q02388 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC13.76□□□□□ -0.21
COL7A1Q02388 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
COL7A1Q02388 IGHV3OR16-7-201ENST00000604106 360 ntBASIC13.76□□□□□ -0.21
COL7A1Q02388 AC055717.3-201ENST00000622967 595 ntBASIC13.76□□□□□ -0.21
COL7A1Q02388 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL7A1Q02388 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms