Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
COL8A1P27658 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.79■□□□□ 0.28
COL8A1P27658 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.79■□□□□ 0.28
COL8A1P27658 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.79■□□□□ 0.28
COL8A1P27658 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.79■□□□□ 0.28
COL8A1P27658 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.79■□□□□ 0.28
COL8A1P27658 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COL8A1P27658 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.79■□□□□ 0.28
COL8A1P27658 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
COL8A1P27658 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.79■□□□□ 0.28
COL8A1P27658 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL8A1P27658 AL121603.2-201ENST00000557373 2117 ntBASIC16.79■□□□□ 0.28
COL8A1P27658 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL8A1P27658 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.79■□□□□ 0.28
COL8A1P27658 KRT8P8-201ENST00000434750 1448 ntBASIC16.79■□□□□ 0.28
COL8A1P27658 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.78■□□□□ 0.28
COL8A1P27658 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL8A1P27658 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.78■□□□□ 0.28
COL8A1P27658 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL8A1P27658 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL8A1P27658 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL8A1P27658 AC092183.1-201ENST00000469884 875 ntBASIC16.78■□□□□ 0.28
COL8A1P27658 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.78■□□□□ 0.28
COL8A1P27658 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.78■□□□□ 0.28
COL8A1P27658 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.78■□□□□ 0.28
COL8A1P27658 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
COL8A1P27658 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.78■□□□□ 0.28
COL8A1P27658 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.78■□□□□ 0.28
COL8A1P27658 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.78■□□□□ 0.28
COL8A1P27658 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.78■□□□□ 0.28
COL8A1P27658 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.78■□□□□ 0.28
COL8A1P27658 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL8A1P27658 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
COL8A1P27658 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.77■□□□□ 0.28
COL8A1P27658 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC16.77■□□□□ 0.28
COL8A1P27658 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
COL8A1P27658 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.28
COL8A1P27658 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 LINC01465-201ENST00000408887 1940 ntBASIC16.77■□□□□ 0.28
COL8A1P27658 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL8A1P27658 FOSL1P1-201ENST00000511041 816 ntBASIC16.77■□□□□ 0.28
COL8A1P27658 NEK4P2-201ENST00000580004 1012 ntBASIC16.77■□□□□ 0.28
COL8A1P27658 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.77■□□□□ 0.28
COL8A1P27658 AF228730.7-201ENST00000641842 219 ntBASIC16.77■□□□□ 0.28
COL8A1P27658 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.77■□□□□ 0.27
COL8A1P27658 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.77■□□□□ 0.27
COL8A1P27658 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
COL8A1P27658 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL8A1P27658 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL8A1P27658 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.77■□□□□ 0.27
COL8A1P27658 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL8A1P27658 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
COL8A1P27658 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.76■□□□□ 0.27
COL8A1P27658 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.76■□□□□ 0.27
COL8A1P27658 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL8A1P27658 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.76■□□□□ 0.27
COL8A1P27658 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.76■□□□□ 0.27
COL8A1P27658 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
COL8A1P27658 AL590627.1-203ENST00000421194 1026 ntBASIC16.76■□□□□ 0.27
COL8A1P27658 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL8A1P27658 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.76■□□□□ 0.27
COL8A1P27658 RASA4DP-201ENST00000460726 1199 ntBASIC16.76■□□□□ 0.27
COL8A1P27658 AP000867.3-201ENST00000524675 377 ntBASIC16.76■□□□□ 0.27
COL8A1P27658 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.76■□□□□ 0.27
COL8A1P27658 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.76■□□□□ 0.27
COL8A1P27658 AC117500.6-201ENST00000624871 588 ntBASIC16.76■□□□□ 0.27
COL8A1P27658 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms