Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC4P09017 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC4P09017 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXC4P09017 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXC4P09017 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXC4P09017 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC4P09017 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HOXC4P09017 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.78■□□□□ 0.6
HOXC4P09017 DUX4L26-201ENST00000489078 1255 ntBASIC18.78■□□□□ 0.6
HOXC4P09017 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
HOXC4P09017 AC006011.2-201ENST00000621313 1158 ntBASIC18.78■□□□□ 0.6
HOXC4P09017 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HOXC4P09017 AC141257.4-201ENST00000634557 245 ntBASIC18.78■□□□□ 0.6
HOXC4P09017 AC136944.6-201ENST00000634818 245 ntBASIC18.78■□□□□ 0.6
HOXC4P09017 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC4P09017 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
HOXC4P09017 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.78■□□□□ 0.6
HOXC4P09017 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HOXC4P09017 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.78■□□□□ 0.6
HOXC4P09017 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXC4P09017 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXC4P09017 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXC4P09017 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HOXC4P09017 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
HOXC4P09017 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.77■□□□□ 0.6
HOXC4P09017 AL031432.5-201ENST00000641059 760 ntBASIC18.77■□□□□ 0.6
HOXC4P09017 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.77■□□□□ 0.6
HOXC4P09017 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXC4P09017 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HOXC4P09017 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HOXC4P09017 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HOXC4P09017 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
HOXC4P09017 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HOXC4P09017 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HOXC4P09017 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HOXC4P09017 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HOXC4P09017 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXC4P09017 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.76■□□□□ 0.59
HOXC4P09017 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC4P09017 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.76■□□□□ 0.59
HOXC4P09017 SLC25A24-204ENST00000569674 2357 ntBASIC18.76■□□□□ 0.59
HOXC4P09017 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC4P09017 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC4P09017 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC4P09017 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.76■□□□□ 0.59
HOXC4P09017 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXC4P09017 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.76■□□□□ 0.59
HOXC4P09017 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.76■□□□□ 0.59
HOXC4P09017 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
HOXC4P09017 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXC4P09017 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXC4P09017 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXC4P09017 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC4P09017 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.76■□□□□ 0.59
HOXC4P09017 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXC4P09017 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXC4P09017 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HOXC4P09017 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HOXC4P09017 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.75■□□□□ 0.59
HOXC4P09017 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXC4P09017 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.75■□□□□ 0.59
HOXC4P09017 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms