Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FAM92A1P2-202ENST00000504766 877 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RNU6-27P-201ENST00000516146 107 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RNU6-445P-201ENST00000516949 107 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RN7SKP147-201ENST00000517154 244 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AP003385.6-201ENST00000531603 374 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC022884.2-201ENST00000578535 580 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 MIR3118-1-201ENST00000581787 76 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC011451.2-201ENST00000604303 598 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC010424.2-201ENST00000607594 443 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AP005432.2-201ENST00000608162 586 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC093799.2-201ENST00000610062 578 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC006329.2-201ENST00000611491 394 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AL590099.1-201ENST00000615276 138 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AL359893.1-201ENST00000447628 1580 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AL731532.2-201ENST00000623542 1953 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 SNORA74A-201ENST00000364089 198 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 RNU6-761P-201ENST00000384148 107 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC009480.2-201ENST00000422916 432 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC006548.1-201ENST00000427470 102 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 COX6CP13-201ENST00000428703 226 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 RPL7L1P1-201ENST00000448259 785 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AL353691.1-201ENST00000451332 387 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 RN7SL329P-201ENST00000467740 299 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 RN7SL97P-201ENST00000486780 299 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 RN7SL346P-201ENST00000491561 294 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 ARL4AP2-201ENST00000507378 601 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AL671862.1-201ENST00000515851 349 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 HIGD1AP3-201ENST00000515857 278 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 RN7SKP116-201ENST00000516902 319 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 IGKV2D-36-201ENST00000518643 226 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AL512360.1-201ENST00000555346 234 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 SUB1P2-201ENST00000556401 297 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 MIR3146-201ENST00000580367 79 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AP000907.4-201ENST00000604143 237 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC017083.3-201ENST00000609955 700 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AP001784.1-201ENST00000624107 428 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 AC091925.2-201ENST00000625059 256 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 CR381572.1-201ENST00000625098 102 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
TRIM39Q9HCM9 MAPK10-349ENST00000641767 3661 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 RNU5E-4P-201ENST00000364931 120 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 RNA5SP455-201ENST00000365190 119 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 SNORA2.3-201ENST00000383920 135 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 RNY3P14-201ENST00000384309 102 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 SNORA70E-201ENST00000384492 135 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 AL078599.1-201ENST00000402075 293 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 HMGN1P24-201ENST00000412282 298 ntBASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TRIM39Q9HCM9 GJA6P-201ENST00000415117 1042 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 157.8 ms