Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AC034105.3-201ENST00000565294 442 ntBASIC3.24□□□□□ -1.89
TRIM4Q9C037 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.24□□□□□ -1.89
TRIM4Q9C037 YWHAQP7-201ENST00000603536 658 ntBASIC3.24□□□□□ -1.89
TRIM4Q9C037 RNA5SP108-201ENST00000605921 117 ntBASIC3.24□□□□□ -1.89
TRIM4Q9C037 AP003117.2-201ENST00000606010 545 ntBASIC3.24□□□□□ -1.89
TRIM4Q9C037 U1.23-201ENST00000610293 146 ntBASIC3.24□□□□□ -1.89
TRIM4Q9C037 RNU1-68P-201ENST00000615382 146 ntBASIC3.24□□□□□ -1.89
TRIM4Q9C037 U1.39-201ENST00000621562 146 ntBASIC3.24□□□□□ -1.89
TRIM4Q9C037 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.24□□□□□ -1.89
TRIM4Q9C037 AC073476.4-201ENST00000628409 72 ntBASIC3.24□□□□□ -1.89
TRIM4Q9C037 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
TRIM4Q9C037 AC092435.3-201ENST00000565538 3654 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
TRIM4Q9C037 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 RSL24D1P1-201ENST00000404972 493 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 MIR1261-201ENST00000408659 82 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 AL139413.1-201ENST00000421309 217 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 RPL21P40-201ENST00000428586 483 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 MTCYBP29-201ENST00000436327 1006 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 RPS15AP29-201ENST00000445539 400 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 Y_RNA.638-201ENST00000459374 113 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 SYF2P1-201ENST00000550658 413 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 AC005476.1-201ENST00000554427 397 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 MIR3945-201ENST00000581853 98 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 NF1P5-201ENST00000588287 448 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 AC006116.7-201ENST00000590141 756 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
TRIM4Q9C037 MTND4P34-201ENST00000572715 1371 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 AC096656.1-201ENST00000623826 1364 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.23□□□□□ -1.89
TRIM4Q9C037 AC011978.2-201ENST00000569835 2054 ntBASIC3.23□□□□□ -1.89
TRIM4Q9C037 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
TRIM4Q9C037 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 MIR422A-201ENST00000362286 90 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 Z99755.1-201ENST00000414048 380 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 ZYG11AP1-201ENST00000430329 837 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 AL590103.1-201ENST00000434488 307 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 HMGB3P11-201ENST00000440127 604 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 UQCRHP3-201ENST00000451503 251 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 BX276092.4-201ENST00000452056 248 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 MTATP6P22-201ENST00000507369 598 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 ATP5A1P2-202ENST00000616464 443 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 AC068722.2-201ENST00000618734 544 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 AL133370.2-201ENST00000619934 439 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 AC026422.1-201ENST00000623961 452 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 AC127502.3-201ENST00000636170 1206 ntBASIC3.22□□□□□ -1.89
TRIM4Q9C037 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
TRIM4Q9C037 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
TRIM4Q9C037 AC116096.1-201ENST00000566804 2314 ntBASIC3.21□□□□□ -1.89
TRIM4Q9C037 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.21□□□□□ -1.9
TRIM4Q9C037 AL645937.1-201ENST00000641739 1652 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
TRIM4Q9C037 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
TRIM4Q9C037 CCNB2P1-201ENST00000399411 1150 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 GSTA8P-201ENST00000404253 637 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 MTND4P11-201ENST00000417020 1058 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
TRIM4Q9C037 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.21□□□□□ -1.9
TRIM4Q9C037 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.21□□□□□ -1.9
TRIM4Q9C037 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.21□□□□□ -1.9
TRIM4Q9C037 RPL23AP67-201ENST00000465341 474 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 RPS4XP13-201ENST00000483219 789 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.21□□□□□ -1.9
TRIM4Q9C037 AC113398.2-201ENST00000507630 558 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
TRIM4Q9C037 SETP2-201ENST00000553886 926 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 AL355816.1-201ENST00000607951 118 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 AC069234.5-201ENST00000611056 416 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 AL359198.2-201ENST00000611836 194 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 AC231759.1-201ENST00000616455 597 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 AC090617.7-201ENST00000623952 126 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms