Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 RNA5SP176-201ENST00000390956 110 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.09□□□□□ -1.43
USB1Q9BQ65 AL159987.2-201ENST00000432754 307 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.09□□□□□ -1.43
USB1Q9BQ65 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 AC073476.1-201ENST00000452854 407 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 RNU6-953P-201ENST00000459154 107 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 RN7SL160P-201ENST00000468558 284 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AP000797.2-201ENST00000475768 606 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC6.09□□□□□ -1.43
USB1Q9BQ65 MTND3P25-201ENST00000509243 135 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AL359273.1-201ENST00000510918 627 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AC007016.1-201ENST00000512110 244 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.09□□□□□ -1.43
USB1Q9BQ65 AC007068.2-201ENST00000543168 395 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.09□□□□□ -1.43
USB1Q9BQ65 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.09□□□□□ -1.43
USB1Q9BQ65 TRAV32-201ENST00000553993 340 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 MIR4643-201ENST00000577473 78 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 MIR378C-201ENST00000578683 81 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 MIR4312-201ENST00000579909 76 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC6.09□□□□□ -1.43
USB1Q9BQ65 MIR4428-201ENST00000584884 73 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.09□□□□□ -1.43
USB1Q9BQ65 AL121917.1-203ENST00000605534 577 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 AP005212.3-201ENST00000619964 528 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 SNORD39.4-201ENST00000620099 78 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 RLIMP1-201ENST00000339626 1680 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 CDY18P-201ENST00000438294 1609 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 AL359893.1-201ENST00000447628 1580 ntBASIC6.09□□□□□ -1.43
USB1Q9BQ65 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
USB1Q9BQ65 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
USB1Q9BQ65 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
USB1Q9BQ65 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
USB1Q9BQ65 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC009643.2-201ENST00000603543 1448 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USB1Q9BQ65 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
USB1Q9BQ65 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
USB1Q9BQ65 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 RNU6-1317P-201ENST00000364582 104 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 RNU6-740P-201ENST00000364734 105 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 RNA5SP152-201ENST00000365184 110 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 U8.8-201ENST00000365399 135 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 Y_RNA.439-201ENST00000384119 94 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC026310.1-201ENST00000396004 378 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 RPS29P13-201ENST00000402041 169 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AL080315.1-201ENST00000406055 466 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 RN7SKP148-201ENST00000410179 275 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC099677.1-201ENST00000420575 175 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 RPL30P3-201ENST00000424262 333 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AHCYP8-201ENST00000425108 209 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 EEF1A1P1-201ENST00000447052 739 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 RPL31P11-202ENST00000454082 372 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 snoU109.4-201ENST00000458953 143 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AP003385.3-201ENST00000472498 287 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 SNRPCP3-201ENST00000474888 476 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 RN7SL502P-201ENST00000481857 290 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC074250.1-201ENST00000511117 192 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 RNU6-861P-201ENST00000516745 106 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 SCARNA24.2-201ENST00000516968 130 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 SULT1C2P2-201ENST00000562517 294 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 MIR4300-201ENST00000581016 96 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 RPL12P48-201ENST00000605620 304 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC123768.4-201ENST00000616244 701 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 PFKM-232ENST00000629846 381 ntTSL 4 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC007993.1-201ENST00000621298 2430 ntBASIC6.08□□□□□ -1.44
USB1Q9BQ65 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms