Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 GNRHR2P1-201ENST00000555315 631 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 PSMB7P1-201ENST00000556349 514 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC106791.2-201ENST00000604680 391 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 MIR6716-201ENST00000613413 80 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 AL136981.2-201ENST00000617319 734 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-1Q99801 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-1Q99801 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-1Q99801 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
NKX3-1Q99801 MTCO1P14-201ENST00000441695 1559 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 OR5BR1P-201ENST00000524992 1330 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
NKX3-1Q99801 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AL391994.1-201ENST00000254724 282 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 RNU6-931P-201ENST00000363850 107 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 SNORA4.1-201ENST00000364263 144 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 RNU1-132P-201ENST00000364300 164 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 RNU6-1122P-201ENST00000384449 107 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 RNY3P9-201ENST00000384727 106 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 MIR1183-201ENST00000408856 89 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 RPL23AP26-201ENST00000412728 464 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC098592.1-201ENST00000419352 333 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC093698.1-201ENST00000423843 571 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 RSL24D1P6-201ENST00000426934 401 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AL035410.1-201ENST00000427409 427 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 OR51AB1P-201ENST00000429046 620 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AL358472.1-201ENST00000431295 329 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC087650.1-201ENST00000431445 468 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 MTCYBP34-201ENST00000439552 670 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 MTCYBP3-201ENST00000445588 1137 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 RSL24D1P3-201ENST00000449255 495 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC105137.1-201ENST00000484355 562 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC069499.1-201ENST00000489433 509 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 KLRA1P-201ENST00000503499 986 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC093534.1-201ENST00000504977 132 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC093281.2-201ENST00000510153 597 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC008958.1-201ENST00000511047 682 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC005798.1-201ENST00000513715 387 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 MTCO1P35-201ENST00000515270 228 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 RNA5SP73-201ENST00000516744 108 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC104986.1-201ENST00000517978 436 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 OR4A12P-201ENST00000530847 918 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC012417.1-201ENST00000582307 1039 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC025588.3-201ENST00000604182 274 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC112220.3-201ENST00000605502 502 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC128687.2-201ENST00000609657 566 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC004825.2-201ENST00000616634 455 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 U6.101-201ENST00000637707 76 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 AC103706.2-201ENST00000638080 240 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.51□□□□□ -1.85
NKX3-1Q99801 AL359893.1-201ENST00000447628 1580 ntBASIC3.51□□□□□ -1.85
NKX3-1Q99801 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
NKX3-1Q99801 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-1Q99801 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC116667.1-201ENST00000604855 2072 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-1Q99801 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL356131.1-201ENST00000405826 414 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 RNA5SP239-201ENST00000410218 129 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 RNU4-72P-201ENST00000410754 173 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 USP9YP33-201ENST00000412220 421 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AL133384.1-201ENST00000412744 351 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 OR8G2P-201ENST00000412796 908 ntBASIC3.5□□□□□ -1.85
NKX3-1Q99801 AMD1P2-201ENST00000412936 992 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms