Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 MTND4P34-201ENST00000572715 1371 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC42Q96M95 MTCO1P24-201ENST00000515438 1558 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AL049737.1-201ENST00000413920 1403 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC002546.1-201ENST00000588041 2504 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 SNORA54-201ENST00000384281 123 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC244098.2-201ENST00000422068 99 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AL445528.1-201ENST00000426330 420 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC42Q96M95 KCTD10P1-201ENST00000434203 625 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC42Q96M95 C1DP3-201ENST00000455013 423 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AL590639.1-201ENST00000456484 337 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC005351.1-201ENST00000511152 786 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC117525.1-201ENST00000515228 503 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 RN7SKP277-201ENST00000516895 283 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AP000857.1-201ENST00000532151 543 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC034105.4-201ENST00000568304 277 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 YWHAQP7-201ENST00000603536 658 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC007566.2-201ENST00000603642 413 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 HMGN2P28-201ENST00000606102 262 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 MIR7112-201ENST00000616126 65 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC42Q96M95 MIR7975-201ENST00000619350 68 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC091953.5-201ENST00000622919 233 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC42Q96M95 AC103988.1-201ENST00000566382 2177 ntBASIC3.12□□□□□ -1.91
CCDC42Q96M95 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC42Q96M95 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC42Q96M95 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 MTCO1P8-201ENST00000416914 1523 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 SNORA63.1-201ENST00000362493 131 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 SNORA9.2-201ENST00000365361 133 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC42Q96M95 MIR134-201ENST00000385258 73 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 RNU2-21P-201ENST00000410368 188 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 RNU2-6P-201ENST00000411404 190 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 AC069157.1-201ENST00000421749 137 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC42Q96M95 AC023512.1-201ENST00000444513 499 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 AC068724.1-201ENST00000487100 792 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 OR2A20P-203ENST00000498397 1268 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 DUXAP2-201ENST00000519198 589 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC42Q96M95 SNRPGP15-201ENST00000600149 222 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 ELOCP35-201ENST00000604289 336 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 GABRG2-229ENST00000641017 3628 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC42Q96M95 ASNSP3-201ENST00000451989 1306 ntBASIC3.11□□□□□ -1.91
CCDC42Q96M95 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC42Q96M95 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC42Q96M95 AC116096.1-201ENST00000566804 2314 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC011978.2-201ENST00000569835 2054 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC42Q96M95 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC42Q96M95 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC42Q96M95 Y_RNA.126-201ENST00000363382 111 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 SNORA71.1-201ENST00000364523 117 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 RNU6-31P-201ENST00000384388 108 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AL355379.1-201ENST00000405542 640 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AL354719.1-201ENST00000406535 843 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC105402.1-201ENST00000413336 545 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 RPL21P40-201ENST00000428586 483 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 RPL27AP5-201ENST00000469428 449 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC034236.1-201ENST00000469891 373 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 RPL23AP55-201ENST00000498163 452 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 DYNLL1P6-201ENST00000503440 264 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 IGKV2-36-201ENST00000519999 223 ntBASIC3.1□□□□□ -1.91
CCDC42Q96M95 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC42Q96M95 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms