Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA3P55318 SNORD56.5-201ENST00000364281 72 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 SNORA70.2-201ENST00000364506 135 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 SNORA14A-201ENST00000364773 135 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA3P55318 CD24P4-201ENST00000382840 243 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 RNU6-1027P-201ENST00000383998 107 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 MIR181A2-201ENST00000384863 110 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 SNORD67-201ENST00000390833 111 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
FOXA3P55318 MIR1289-1-201ENST00000408836 144 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA3P55318 RPL26P37-201ENST00000411983 438 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 SYF2P2-201ENST00000417620 583 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA3P55318 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA3P55318 NDUFA5P10-201ENST00000432147 357 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 AC011242.1-201ENST00000433596 1158 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 AL392003.1-201ENST00000434394 243 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 Z77249.1-201ENST00000444622 1175 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 Z96811.1-201ENST00000445880 108 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 AC104629.2-201ENST00000468627 598 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 RN7SL297P-201ENST00000483161 293 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA3P55318 HMGB1P22-201ENST00000505315 124 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA3P55318 AC107016.2-201ENST00000547968 190 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA3P55318 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA3P55318 MIR4700-201ENST00000578311 74 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC2.22□□□□□ -2.05
FOXA3P55318 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA3P55318 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA3P55318 AC138932.5-201ENST00000617759 563 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 AC243312.2-201ENST00000623340 601 ntBASIC2.22□□□□□ -2.05
FOXA3P55318 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.22□□□□□ -2.05
FOXA3P55318 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.21□□□□□ -2.05
FOXA3P55318 AC233263.6-201ENST00000631132 1963 ntBASIC2.21□□□□□ -2.05
FOXA3P55318 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.05
FOXA3P55318 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
FOXA3P55318 MTND4P31-201ENST00000425607 1343 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA3P55318 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA3P55318 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA3P55318 AC073325.2-201ENST00000339545 159 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA3P55318 RNA5SP124-201ENST00000362739 110 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 SNORA5A-201ENST00000384111 134 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 SNORA7.4-201ENST00000384249 137 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 RN7SKP220-201ENST00000410611 288 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 RN7SKP159-201ENST00000410657 292 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 AC005517.2-201ENST00000424673 553 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 RPS6P14-201ENST00000425165 719 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 MTATP6P4-201ENST00000427725 675 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 AL445584.1-201ENST00000431451 330 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 UBBP3-201ENST00000445497 241 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 Z99714.1-201ENST00000450463 807 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 NPM1P13-201ENST00000452663 865 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 RPS24P6-201ENST00000452670 400 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA3P55318 HMGB1P25-201ENST00000468402 607 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.21□□□□□ -2.06
FOXA3P55318 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA3P55318 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA3P55318 SNORA31.1-201ENST00000515993 133 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 SNORA31.5-201ENST00000516190 133 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 OR5B10P-201ENST00000532869 642 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA3P55318 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA3P55318 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC2.21□□□□□ -2.06
FOXA3P55318 MIR5186-201ENST00000577504 120 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 MIR3922-201ENST00000585192 84 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA3P55318 AL031985.2-201ENST00000600955 480 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 AC113368.1-201ENST00000603736 382 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA3P55318 AC002076.2-201ENST00000617362 122 ntBASIC2.21□□□□□ -2.06
FOXA3P55318 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA3P55318 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA3P55318 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA3P55318 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA3P55318 AC087565.3-202ENST00000642085 1603 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.2□□□□□ -2.06
FOXA3P55318 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA3P55318 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
FOXA3P55318 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
FOXA3P55318 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA3P55318 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA3P55318 RNU6-1293P-201ENST00000384077 107 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 MTND4P13-201ENST00000402078 1023 ntBASIC2.2□□□□□ -2.06
FOXA3P55318 U3.42-201ENST00000408746 214 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms